Variant report

Variant	rs72858635
Chromosome Location	chr4:77885585-77885586
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77883715..77886420-chr4:77899296..77901087,2	K562	blood:
2	chr4:77884853..77887082-chr4:77888550..77891018,2	MCF-7	breast:
3	chr4:77868648..77873147-chr4:77883433..77888727,12	MCF-7	breast:
4	chr4:77882826..77885713-chr4:77891528..77894095,3	K562	blood:

Variant related genes	Relation type
ENSG00000138758	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4252872	0.81[AFR][1000 genomes]
rs59044450	0.93[AFR][1000 genomes]
rs6532790	0.81[AFR][1000 genomes]
rs72858646	0.85[AFR][1000 genomes]
rs7656485	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1810313	chr4:77778670-77902099	Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77872600-77890800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:77872600-77894400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:77872600-77899200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:77872600-77900400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:77873000-77885800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:77873000-77899200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:77873400-77894200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:77873400-77894400	Weak transcription	NHEK	skin
9	chr4:77874200-77885600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:77874400-77891000	Weak transcription	K562	blood
11	chr4:77876000-77887200	Weak transcription	HMEC	breast
12	chr4:77876000-77895200	Weak transcription	Aorta	Aorta
13	chr4:77876400-77891200	Weak transcription	HUVEC	blood vessel
14	chr4:77876600-77887200	Weak transcription	Psoas Muscle	Psoas
15	chr4:77876600-77895400	Weak transcription	Right Atrium	heart
16	chr4:77876800-77906000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:77877800-77890400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:77878000-77890400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:77878400-77890600	Weak transcription	Ovary	ovary
20	chr4:77878600-77885800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:77878600-77888200	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:77878800-77899200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr4:77879000-77893600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:77879000-77894400	Weak transcription	Fetal Stomach	stomach
25	chr4:77879000-77898400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:77879600-77893400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:77879600-77894200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:77879600-77904200	Weak transcription	Gastric	stomach
29	chr4:77881200-77889800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:77881600-77885600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr4:77881600-77891200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:77881600-77899200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr4:77881800-77889800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:77882000-77885800	Weak transcription	Primary T cells from cord blood	blood
35	chr4:77882000-77885800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr4:77882000-77886000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:77882200-77885800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr4:77882200-77893000	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr4:77882200-77905200	Weak transcription	Fetal Intestine Large	intestine
40	chr4:77882400-77893400	Weak transcription	NH-A	brain
41	chr4:77883200-77885600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr4:77883800-77888800	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr4:77884000-77885600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr4:77884000-77886000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr4:77884000-77891200	Weak transcription	Brain Germinal Matrix	brain
46	chr4:77884200-77886400	ZNF genes & repeats	GM12878-XiMat	blood
47	chr4:77884200-77891000	Weak transcription	Fetal Brain Female	brain
48	chr4:77884200-77893200	Weak transcription	NHLF	lung
49	chr4:77884200-77894400	Weak transcription	Fetal Intestine Small	intestine
50	chr4:77884400-77886200	Weak transcription	Rectal Smooth Muscle	rectum

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