Variant report

Variant	rs904042
Chromosome Location	chr4:77893674-77893675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77870309..77872685-chr4:77893595..77896016,2	MCF-7	breast:
2	chr4:77882826..77885713-chr4:77891528..77894095,3	K562	blood:
3	chr4:77889376..77894977-chr4:77900561..77905998,5	MCF-7	breast:
4	chr4:77869338..77872379-chr4:77892977..77896385,4	K562	blood:

Variant related genes	Relation type
ENSG00000138758	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1497073	1.00[EUR][1000 genomes]
rs2645670	1.00[EUR][1000 genomes]
rs2645687	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2645700	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2703109	1.00[EUR][1000 genomes]
rs59044450	0.83[AFR][1000 genomes]
rs72858646	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1810313	chr4:77778670-77902099	Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77872600-77894400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:77872600-77899200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:77872600-77900400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:77873000-77899200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:77873400-77894200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr4:77873400-77894400	Weak transcription	NHEK	skin
7	chr4:77876000-77895200	Weak transcription	Aorta	Aorta
8	chr4:77876600-77895400	Weak transcription	Right Atrium	heart
9	chr4:77876800-77906000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:77878800-77899200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:77879000-77894400	Weak transcription	Fetal Stomach	stomach
12	chr4:77879000-77898400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:77879600-77894200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:77879600-77904200	Weak transcription	Gastric	stomach
15	chr4:77881600-77899200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr4:77882200-77905200	Weak transcription	Fetal Intestine Large	intestine
17	chr4:77884200-77894400	Weak transcription	Fetal Intestine Small	intestine
18	chr4:77884800-77899200	Weak transcription	Placenta	Placenta
19	chr4:77884800-77899200	Weak transcription	Small Intestine	intestine
20	chr4:77884800-77904200	Weak transcription	Pancreas	Pancrea
21	chr4:77886000-77895000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr4:77886200-77895000	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr4:77886200-77898200	Weak transcription	Primary T cells from cord blood	blood
24	chr4:77886200-77898200	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr4:77886200-77899200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:77886400-77898400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:77886800-77894200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr4:77887600-77898400	Weak transcription	HMEC	breast
29	chr4:77887600-77899200	Weak transcription	Brain Anterior Caudate	brain
30	chr4:77888000-77895200	Weak transcription	Psoas Muscle	Psoas
31	chr4:77888000-77899400	Weak transcription	Lung	lung
32	chr4:77888400-77894400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr4:77890000-77894000	Enhancers	Fetal Kidney	kidney
34	chr4:77890200-77901400	Weak transcription	Colon Smooth Muscle	Colon
35	chr4:77890400-77894000	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:77890600-77894000	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr4:77891000-77894400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr4:77891200-77905600	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr4:77891400-77899200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr4:77891400-77899400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
41	chr4:77891400-77899400	Weak transcription	Left Ventricle	heart
42	chr4:77891600-77894200	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr4:77891600-77896400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:77891600-77897600	Weak transcription	K562	blood
45	chr4:77891600-77899400	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr4:77891600-77907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr4:77891800-77893800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr4:77891800-77894000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr4:77891800-77894400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:77891800-77895000	Weak transcription	HUVEC	blood vessel

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