Variant report

Variant	rs72861662
Chromosome Location	chr4:78096862-78096863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:78085870..78089937-chr4:78095551..78099001,4	MCF-7	breast:
2	chr4:78075731..78079690-chr4:78094902..78097622,3	MCF-7	breast:
3	chr4:77994706..77997285-chr4:78095427..78097640,2	K562	blood:

Variant related genes	Relation type
ENSG00000118816	Chromatin interaction
ENSG00000138764	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1050603	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4150068	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4150075	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4150077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4150081	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861638	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861642	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861657	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861660	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72861683	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879500	chr4:78045960-78115334	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78084600-78097800	Weak transcription	Esophagus	oesophagus
2	chr4:78084600-78102200	Weak transcription	Spleen	Spleen
3	chr4:78087400-78100600	Weak transcription	Hela-S3	cervix
4	chr4:78089400-78108000	Weak transcription	Left Ventricle	heart
5	chr4:78090400-78109800	Weak transcription	Gastric	stomach
6	chr4:78090800-78098000	Weak transcription	Fetal Brain Male	brain
7	chr4:78091000-78097600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:78091600-78098000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:78091800-78105000	Weak transcription	Adipose Nuclei	Adipose
10	chr4:78092000-78097800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr4:78092000-78099000	Enhancers	HMEC	breast
12	chr4:78092200-78097600	Weak transcription	Fetal Intestine Large	intestine
13	chr4:78092200-78097600	Weak transcription	Fetal Intestine Small	intestine
14	chr4:78092200-78097800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:78092200-78099200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:78092200-78106000	Weak transcription	Primary T cells from cord blood	blood
17	chr4:78092400-78097600	Weak transcription	Fetal Stomach	stomach
18	chr4:78092400-78097800	Weak transcription	Fetal Lung	lung
19	chr4:78092400-78097800	Weak transcription	Placenta	Placenta
20	chr4:78092400-78098200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr4:78092400-78098400	Weak transcription	Fetal Kidney	kidney
22	chr4:78092400-78100200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr4:78092400-78100400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr4:78092400-78100800	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr4:78092600-78097800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr4:78092600-78100800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr4:78092600-78108600	Weak transcription	Thymus	Thymus
28	chr4:78093000-78098000	Enhancers	HSMM	muscle
29	chr4:78094400-78097600	Enhancers	NHEK	skin
30	chr4:78094400-78114200	Weak transcription	Primary B cells from cord blood	blood
31	chr4:78094600-78097000	Enhancers	Fetal Muscle Leg	muscle
32	chr4:78095400-78101200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr4:78095600-78097200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
34	chr4:78095800-78097000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr4:78095800-78097600	Weak transcription	HSMMtube	muscle
36	chr4:78095800-78097800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:78096200-78097200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
38	chr4:78096200-78097200	Enhancers	Brain Germinal Matrix	brain
39	chr4:78096200-78100200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:78096400-78097200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
41	chr4:78096400-78097200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
42	chr4:78096400-78097600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr4:78096400-78099400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
44	chr4:78096400-78100000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:78096400-78100200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:78096600-78097000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr4:78096800-78097000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
48	chr4:78096800-78097000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
49	chr4:78096800-78098200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr4:78096800-78098200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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