Variant report
| Variant | rs72862543 |
|---|---|
| Chromosome Location | chr11:16756875-16756876 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:16754585..16757669-chr11:16758300..16760310,5 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000110696 | Chromatin interaction |
| ENSG00000110693 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs4456227 | 0.82[EUR][1000 genomes] |
| rs4756859 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4757409 | 0.82[EUR][1000 genomes] |
| rs4757412 | 0.82[EUR][1000 genomes] |
| rs4757418 | 0.85[EUR][1000 genomes] |
| rs55684437 | 0.82[EUR][1000 genomes] |
| rs55928688 | 0.82[EUR][1000 genomes] |
| rs59872066 | 0.82[EUR][1000 genomes] |
| rs66506578 | 0.82[EUR][1000 genomes] |
| rs66650309 | 0.82[EUR][1000 genomes] |
| rs67055609 | 0.81[EUR][1000 genomes] |
| rs67244957 | 0.82[EUR][1000 genomes] |
| rs68176835 | 0.81[EUR][1000 genomes] |
| rs7115472 | 0.82[EUR][1000 genomes] |
| rs7116277 | 0.82[EUR][1000 genomes] |
| rs7120735 | 0.82[EUR][1000 genomes] |
| rs7122236 | 0.82[EUR][1000 genomes] |
| rs72859412 | 0.82[EUR][1000 genomes] |
| rs72859418 | 0.82[EUR][1000 genomes] |
| rs72859435 | 0.82[EUR][1000 genomes] |
| rs72859451 | 0.82[EUR][1000 genomes] |
| rs72859457 | 0.82[EUR][1000 genomes] |
| rs72859475 | 0.82[EUR][1000 genomes] |
| rs72859478 | 1.00[AFR][1000 genomes];0.84[EUR][1000 genomes] |
| rs72859480 | 0.82[EUR][1000 genomes] |
| rs72859488 | 0.82[EUR][1000 genomes] |
| rs72859492 | 0.82[EUR][1000 genomes] |
| rs72861207 | 0.85[EUR][1000 genomes] |
| rs72861211 | 0.85[EUR][1000 genomes] |
| rs72875216 | 0.84[EUR][1000 genomes] |
| rs72875219 | 0.82[EUR][1000 genomes] |
| rs72875220 | 0.82[EUR][1000 genomes] |
| rs7925144 | 0.82[EUR][1000 genomes] |
| rs7926202 | 0.82[EUR][1000 genomes] |
| rs7940952 | 0.82[EUR][1000 genomes] |
| rs7944054 | 0.82[EUR][1000 genomes] |
| rs9667265 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv553566 | chr11:16329009-16799044 | Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:16748200-16759400 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
