Variant report

Variant	rs72859480
Chromosome Location	chr11:16605106-16605107
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16604009..16606507-chr11:16624728..16626475,2	K562	blood:
2	chr11:16599911..16602077-chr11:16604004..16605706,2	K562	blood:
3	chr11:16601637..16605611-chr11:16624728..16628897,4	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1393928	0.86[EUR][1000 genomes]
rs4132853	0.86[EUR][1000 genomes]
rs4256940	0.87[EUR][1000 genomes]
rs4365016	0.92[EUR][1000 genomes]
rs4375406	0.86[EUR][1000 genomes]
rs4456227	1.00[EUR][1000 genomes]
rs4573649	0.86[EUR][1000 genomes]
rs4756853	0.86[EUR][1000 genomes]
rs4756859	0.90[EUR][1000 genomes]
rs4757409	1.00[EUR][1000 genomes]
rs4757412	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4757418	0.97[EUR][1000 genomes]
rs55684437	1.00[EUR][1000 genomes]
rs55928688	1.00[EUR][1000 genomes]
rs56153248	0.82[EUR][1000 genomes]
rs56225716	0.86[EUR][1000 genomes]
rs56255909	0.86[EUR][1000 genomes]
rs59872066	1.00[EUR][1000 genomes]
rs66506578	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66650309	1.00[EUR][1000 genomes]
rs67055609	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67244957	1.00[EUR][1000 genomes]
rs68176835	0.98[EUR][1000 genomes]
rs7115472	1.00[EUR][1000 genomes]
rs7116277	1.00[EUR][1000 genomes]
rs7120735	1.00[EUR][1000 genomes]
rs7122236	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7131206	0.94[EUR][1000 genomes]
rs72859412	1.00[EUR][1000 genomes]
rs72859418	1.00[EUR][1000 genomes]
rs72859435	1.00[EUR][1000 genomes]
rs72859451	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72859457	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72859461	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72859475	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72859478	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72859488	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72859492	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72861207	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72861211	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72862543	0.82[EUR][1000 genomes]
rs72873319	0.84[EUR][1000 genomes]
rs72873332	0.84[EUR][1000 genomes]
rs72873340	0.84[EUR][1000 genomes]
rs72873349	0.86[EUR][1000 genomes]
rs72873376	0.86[EUR][1000 genomes]
rs72873390	0.86[EUR][1000 genomes]
rs72873400	0.92[EUR][1000 genomes]
rs72875203	0.92[EUR][1000 genomes]
rs72875216	0.98[EUR][1000 genomes]
rs72875219	1.00[EUR][1000 genomes]
rs72875220	1.00[EUR][1000 genomes]
rs7925144	1.00[EUR][1000 genomes]
rs7926202	1.00[EUR][1000 genomes]
rs7940952	1.00[EUR][1000 genomes]
rs7944054	1.00[EUR][1000 genomes]
rs9667265	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16584400-16605600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr11:16595200-16608200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:16595400-16609200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:16598600-16609200	Weak transcription	Left Ventricle	heart
5	chr11:16603200-16609400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:16603400-16609200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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