Variant report

Variant	rs1393928
Chromosome Location	chr11:16484638-16484639
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16482295..16484749-chr11:16485134..16488693,3	K562	blood:
2	chr11:16480597..16483257-chr11:16484411..16487099,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs16933090	0.81[CEU][hapmap]
rs17470624	0.81[CEU][hapmap]
rs17554911	0.83[CEU][hapmap]
rs4132853	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4256940	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4365016	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4375406	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4456227	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4573649	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4756846	0.81[CEU][hapmap]
rs4756853	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4757400	0.82[CEU][hapmap]
rs4757409	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4757412	0.86[EUR][1000 genomes]
rs4757418	0.83[EUR][1000 genomes]
rs55684437	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55928688	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56153248	0.80[EUR][1000 genomes]
rs56225716	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56255909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59268707	0.88[ASN][1000 genomes]
rs59749567	0.88[ASN][1000 genomes]
rs59752601	0.82[ASN][1000 genomes]
rs59872066	0.86[EUR][1000 genomes]
rs66506578	0.86[EUR][1000 genomes]
rs66650309	0.86[EUR][1000 genomes]
rs67055609	0.84[EUR][1000 genomes]
rs67244957	0.86[EUR][1000 genomes]
rs68176835	0.84[EUR][1000 genomes]
rs7115472	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7116277	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7120735	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7122236	0.86[EUR][1000 genomes]
rs72859412	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72859418	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72859435	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72859451	0.86[EUR][1000 genomes]
rs72859457	0.86[EUR][1000 genomes]
rs72859461	0.82[EUR][1000 genomes]
rs72859475	0.86[EUR][1000 genomes]
rs72859478	0.83[EUR][1000 genomes]
rs72859480	0.86[EUR][1000 genomes]
rs72859488	0.84[EUR][1000 genomes]
rs72859492	0.84[EUR][1000 genomes]
rs72861207	0.83[EUR][1000 genomes]
rs72861211	0.83[EUR][1000 genomes]
rs72873319	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72873332	0.98[EUR][1000 genomes]
rs72873340	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72873349	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72873376	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72873390	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72873400	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72875203	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72875216	0.83[EUR][1000 genomes]
rs72875219	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72875220	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7925144	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7926202	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7940952	0.86[EUR][1000 genomes]
rs7944054	0.86[EUR][1000 genomes]
rs9667265	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16461600-16491200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:16461600-16510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16464800-16491000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:16478200-16490400	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr11:16480800-16497000	Weak transcription	Left Ventricle	heart
6	chr11:16480800-16497800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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