Variant report

Variant	rs4256940
Chromosome Location	chr11:16534636-16534637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16527461..16531095-chr11:16531624..16535473,5	K562	blood:

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs1393928	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16933090	0.81[CEU][hapmap]
rs17470624	0.81[CEU][hapmap];0.85[AMR][1000 genomes]
rs17554911	0.83[CEU][hapmap];0.85[AMR][1000 genomes]
rs4132853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4365016	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4375406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4456227	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4573649	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4756846	0.81[CEU][hapmap]
rs4756853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4756859	0.82[EUR][1000 genomes]
rs4757400	0.82[CEU][hapmap];0.92[AMR][1000 genomes]
rs4757409	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4757412	0.87[EUR][1000 genomes]
rs4757418	0.83[EUR][1000 genomes]
rs55684437	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55928688	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56153248	0.85[AMR][1000 genomes]
rs56225716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56255909	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59872066	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66506578	0.87[EUR][1000 genomes]
rs66650309	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67055609	0.85[EUR][1000 genomes]
rs67244957	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68176835	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7115472	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7116277	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7120735	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7122236	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7131206	0.80[EUR][1000 genomes]
rs72859412	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72859418	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72859435	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72859451	0.87[EUR][1000 genomes]
rs72859457	0.87[EUR][1000 genomes]
rs72859461	0.83[EUR][1000 genomes]
rs72859475	0.87[EUR][1000 genomes]
rs72859478	0.88[EUR][1000 genomes]
rs72859480	0.87[EUR][1000 genomes]
rs72859488	0.85[EUR][1000 genomes]
rs72859492	0.85[EUR][1000 genomes]
rs72861207	0.83[EUR][1000 genomes]
rs72861211	0.83[EUR][1000 genomes]
rs72871370	0.85[AMR][1000 genomes]
rs72871390	0.81[AMR][1000 genomes]
rs72871402	0.88[AMR][1000 genomes]
rs72873303	0.88[AMR][1000 genomes]
rs72873307	0.92[AMR][1000 genomes]
rs72873319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72873332	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72873340	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72873349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72873376	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72873390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72873400	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72875203	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72875216	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72875219	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72875220	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7925144	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7926202	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7940952	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7944054	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9667265	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2761650	chr11:16530452-16541623	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16532400-16534800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr11:16532800-16535600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:16533200-16535000	Enhancers	Fetal Lung	lung
4	chr11:16533800-16535600	Weak transcription	Psoas Muscle	Psoas
5	chr11:16533800-16541200	Weak transcription	Fetal Heart	heart
6	chr11:16534400-16535800	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links