Variant report

Variant	rs7131206
Chromosome Location	chr11:16566893-16566894
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16565643..16568229-chr11:16568917..16572483,3	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs4256940	0.80[EUR][1000 genomes]
rs4365016	0.85[EUR][1000 genomes]
rs4456227	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756859	0.83[EUR][1000 genomes]
rs4757409	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4757412	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4757418	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs55684437	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55928688	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56153248	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs59872066	0.94[EUR][1000 genomes]
rs66506578	0.94[EUR][1000 genomes]
rs66650309	0.94[EUR][1000 genomes]
rs67055609	0.92[EUR][1000 genomes]
rs67244957	0.94[EUR][1000 genomes]
rs68176835	0.92[EUR][1000 genomes]
rs7115472	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7116277	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7120735	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7122236	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs72859412	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72859418	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72859435	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72859451	0.94[EUR][1000 genomes]
rs72859457	0.94[EUR][1000 genomes]
rs72859461	0.90[EUR][1000 genomes]
rs72859475	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs72859478	0.91[EUR][1000 genomes]
rs72859480	0.94[EUR][1000 genomes]
rs72859488	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72859492	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72861207	0.91[EUR][1000 genomes]
rs72861211	0.91[EUR][1000 genomes]
rs72873400	0.85[EUR][1000 genomes]
rs72875203	0.85[EUR][1000 genomes]
rs72875216	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72875219	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72875220	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7925144	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7926202	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7940952	0.94[EUR][1000 genomes]
rs7944054	0.94[EUR][1000 genomes]
rs9667265	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1035768	chr11:16530440-16578566	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16566200-16567000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16566200-16567200	Weak transcription	Psoas Muscle	Psoas

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