Variant report

Variant	rs4757400
Chromosome Location	chr11:16469929-16469930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1393928	0.82[CEU][hapmap]
rs16933090	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs17470624	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17554301	0.93[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17554911	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4132853	0.92[AMR][1000 genomes]
rs4256940	0.92[AMR][1000 genomes]
rs4365016	0.89[AMR][1000 genomes]
rs4375406	0.92[AMR][1000 genomes]
rs4456227	0.82[AMR][1000 genomes]
rs4573649	0.92[AMR][1000 genomes]
rs4756846	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4756853	0.92[AMR][1000 genomes]
rs4757409	0.82[AMR][1000 genomes]
rs55684437	0.82[AMR][1000 genomes]
rs55820833	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55928688	0.82[AMR][1000 genomes]
rs56030154	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56225716	0.92[AMR][1000 genomes]
rs57463944	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7115472	0.82[AMR][1000 genomes]
rs7116277	0.82[AMR][1000 genomes]
rs7120735	0.82[AMR][1000 genomes]
rs72859412	0.82[AMR][1000 genomes]
rs72859418	0.82[AMR][1000 genomes]
rs72859435	0.82[AMR][1000 genomes]
rs72871370	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72871390	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72871402	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72873303	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72873307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72873319	0.92[AMR][1000 genomes]
rs72873332	0.85[AMR][1000 genomes]
rs72873340	0.92[AMR][1000 genomes]
rs72873349	0.92[AMR][1000 genomes]
rs72873376	0.92[AMR][1000 genomes]
rs72873390	0.92[AMR][1000 genomes]
rs72873400	0.89[AMR][1000 genomes]
rs72875203	0.89[AMR][1000 genomes]
rs72875216	0.85[AMR][1000 genomes]
rs72875219	0.82[AMR][1000 genomes]
rs72875220	0.82[AMR][1000 genomes]
rs7925144	0.82[AMR][1000 genomes]
rs7926202	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv832075	chr11:16391700-16490934	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16461600-16491200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:16461600-16510000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16461800-16478000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:16464800-16491000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:16469400-16470000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:16469800-16477800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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