Variant report

Variant	rs72862578
Chromosome Location	chr11:16778607-16778608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16759801..16761698-chr11:16777281..16779265,2	K562	blood:
2	chr11:16769071..16772621-chr11:16777573..16781091,3	MCF-7	breast:
3	chr11:16759049..16761712-chr11:16777478..16779237,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110696	Chromatin interaction
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12786886	1.00[AFR][1000 genomes]
rs17472529	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56207515	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72859410	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs72861216	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv2571561	chr11:16778028-16779499	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16761400-16783000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:16762200-16780200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:16763000-16780600	Strong transcription	Fetal Thymus	thymus
4	chr11:16763200-16780200	Strong transcription	Osteobl	bone
5	chr11:16763400-16780400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:16763600-16780400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:16764000-16781000	Strong transcription	Primary B cells from peripheral blood	blood
8	chr11:16764400-16780000	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:16764400-16780400	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr11:16764600-16779600	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:16764600-16780200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:16764600-16780400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:16764600-16780400	Strong transcription	A549	lung
14	chr11:16764600-16781600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:16765000-16780200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:16765000-16780400	Strong transcription	Dnd41	blood
17	chr11:16765400-16780000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:16765400-16780400	Strong transcription	Duodenum Mucosa	Duodenum
19	chr11:16765800-16779600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:16765800-16779800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:16765800-16780200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr11:16765800-16780400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:16765800-16780600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:16765800-16780600	Strong transcription	Placenta	Placenta
25	chr11:16766000-16779800	Strong transcription	Hela-S3	cervix
26	chr11:16766000-16780200	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:16766000-16780200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr11:16766000-16780800	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr11:16766000-16781000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:16766200-16778800	Strong transcription	Liver	Liver
31	chr11:16766200-16780200	Strong transcription	Primary hematopoietic stem cells	blood
32	chr11:16766200-16780600	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr11:16766200-16780600	Strong transcription	Fetal Intestine Large	intestine
34	chr11:16766400-16779800	Strong transcription	NH-A	brain
35	chr11:16766400-16780400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:16766600-16780800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:16766800-16780800	Strong transcription	Fetal Muscle Leg	muscle
38	chr11:16767000-16780200	Strong transcription	H1 Cell Line	embryonic stem cell
39	chr11:16767000-16780200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:16767600-16780200	Strong transcription	Duodenum Smooth Muscle	Duodenum
41	chr11:16767800-16780200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr11:16767800-16780400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr11:16767800-16780400	Strong transcription	Skeletal Muscle Female	skeletal muscle
44	chr11:16767800-16780600	Strong transcription	Adipose Nuclei	Adipose
45	chr11:16769400-16781200	Strong transcription	Primary T helper cells fromperipheralblood	blood
46	chr11:16771000-16779600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
47	chr11:16771000-16780200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr11:16771200-16780400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:16772000-16779800	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:16772800-16780600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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