Variant report

Variant	rs72861216
Chromosome Location	chr11:16636408-16636409
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17472529	1.00[AFR][1000 genomes]
rs56207515	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72859410	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72862578	1.00[AFR][1000 genomes]
rs72864006	1.00[AMR][1000 genomes]
rs72864009	1.00[AMR][1000 genomes]
rs72871339	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553566	chr11:16329009-16799044	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv897016	chr11:16455794-16691743	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16636000-16636600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:16636000-16636800	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr11:16636200-16636600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
4	chr11:16636200-16636800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:16636200-16636800	Active TSS	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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