The 2.0 version of rSNPBase

Variant report

Variant rs72864009
Chromosome Location chr11:16822645-16822646
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:16777200-16826000 Weak transcription Brain Substantia Nigra brain
2 chr11:16795800-16831400 Weak transcription Brain Germinal Matrix brain
3 chr11:16797200-16837800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
4 chr11:16799000-16842200 Weak transcription iPS-15b Cell Line embryonic stem cell
5 chr11:16801400-16833400 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr11:16802200-16827600 Weak transcription Brain Cingulate Gyrus brain
7 chr11:16803400-16826000 Weak transcription Pancreatic Islets Pancreatic Islet
8 chr11:16803800-16842000 Weak transcription Fetal Kidney kidney
9 chr11:16807400-16828000 Weak transcription Brain Inferior Temporal Lobe brain
10 chr11:16807800-16826000 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr11:16810000-16833600 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr11:16810400-16834200 Weak transcription HUES6 Cell Line embryonic stem cell
13 chr11:16813200-16823000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
14 chr11:16813200-16825000 Strong transcription Fetal Intestine Large intestine
15 chr11:16813200-16828000 Weak transcription Fetal Brain Female brain
16 chr11:16813200-16871400 Weak transcription Rectal Smooth Muscle rectum
17 chr11:16813400-16825200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr11:16813600-16822800 Weak transcription Ovary ovary
19 chr11:16813600-16825600 Weak transcription Lung lung
20 chr11:16813600-16826200 Weak transcription Brain Hippocampus Middle brain
21 chr11:16813600-16828200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
22 chr11:16813800-16825600 Weak transcription Small Intestine intestine
23 chr11:16814400-16823200 Weak transcription Placenta Amnion Placenta Amnion
24 chr11:16814800-16831600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr11:16815400-16822800 Weak transcription Fetal Muscle Trunk muscle
26 chr11:16815400-16824800 Strong transcription Liver Liver
27 chr11:16815400-16826000 Weak transcription A549 lung
28 chr11:16815400-16827600 Weak transcription Aorta Aorta
29 chr11:16815400-16828000 Weak transcription HSMMtube muscle
30 chr11:16815800-16832600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
31 chr11:16816000-16822800 Weak transcription Brain Anterior Caudate brain
32 chr11:16816800-16836400 Weak transcription Thymus Thymus
33 chr11:16817800-16824200 Strong transcription Duodenum Mucosa Duodenum
34 chr11:16818800-16825800 Enhancers Primary T helper 17 cells PMA-I stimulated --
35 chr11:16819600-16822800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
36 chr11:16819800-16823000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
37 chr11:16820000-16825400 Weak transcription Spleen Spleen
38 chr11:16820000-16832600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr11:16820800-16822800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
40 chr11:16821000-16825800 Strong transcription Fetal Intestine Small intestine
41 chr11:16821200-16823800 Strong transcription HepG2 liver
42 chr11:16821200-16824800 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr11:16821200-16824800 Strong transcription Placenta Placenta
44 chr11:16821200-16826600 Weak transcription Primary monocytes fromperipheralblood blood
45 chr11:16821400-16822800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
46 chr11:16821400-16824400 Strong transcription Esophagus oesophagus
47 chr11:16821600-16822800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
48 chr11:16821800-16825000 Strong transcription Fetal Adrenal Gland Adrenal Gland
49 chr11:16822000-16823400 Genic enhancers Fetal Heart heart
50 chr11:16822000-16823600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived

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Last update: Aug 31, 2015