Variant report

Variant	rs72863403
Chromosome Location	chr4:78540718-78540719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11930938	1.00[ASN][1000 genomes]
rs11937898	1.00[ASN][1000 genomes]
rs11942634	1.00[ASN][1000 genomes]
rs11947976	1.00[ASN][1000 genomes]
rs72861980	1.00[AMR][1000 genomes]
rs72861981	1.00[AMR][1000 genomes]
rs72861984	1.00[AMR][1000 genomes]
rs72861996	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829975	chr4:78426210-78565198	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv1010104	chr4:78520674-78553754	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv461560	chr4:78534857-78563584	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv594699	chr4:78534857-78563584	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:78532000-78544000	Weak transcription	Fetal Lung	lung
2	chr4:78539800-78540800	Enhancers	Brain Angular Gyrus	brain
3	chr4:78539800-78540800	Enhancers	Pancreas	Pancrea
4	chr4:78539800-78541200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:78540000-78540800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:78540000-78540800	Enhancers	Fetal Muscle Leg	muscle
7	chr4:78540000-78540800	Enhancers	HSMMtube	muscle
8	chr4:78540000-78541000	Enhancers	Liver	Liver
9	chr4:78540000-78541400	Enhancers	Brain Anterior Caudate	brain
10	chr4:78540200-78556800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:78540400-78540800	Enhancers	Brain Cingulate Gyrus	brain
12	chr4:78540400-78542000	Weak transcription	Stomach Mucosa	stomach
13	chr4:78540600-78541000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:78540600-78541000	Active TSS	Brain Substantia Nigra	brain
15	chr4:78540600-78541400	Enhancers	Brain Hippocampus Middle	brain
16	chr4:78540600-78541400	Enhancers	Brain Inferior Temporal Lobe	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links