Variant report

Variant	rs72864099
Chromosome Location	chr4:79968792-79968793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:79963103..79964922-chr4:79966258..79968873,2	K562	blood:
2	chr4:79962355..79964603-chr4:79966690..79968873,2	K562	blood:
3	chr4:79959121..79962093-chr4:79967361..79969057,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17003568	1.00[AMR][1000 genomes]
rs59738409	1.00[AMR][1000 genomes]
rs72864017	1.00[AMR][1000 genomes]
rs72864018	1.00[AMR][1000 genomes]
rs72864073	1.00[AMR][1000 genomes]
rs72864077	1.00[AMR][1000 genomes]
rs72864101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72870858	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829979	chr4:79819168-80019159	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3448470	chr4:79898340-80026510	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv432614	chr4:79910989-79993822	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79964600-79970000	Weak transcription	Fetal Intestine Large	intestine
2	chr4:79965600-79969800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:79965600-79970000	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:79965600-79973200	Weak transcription	K562	blood
5	chr4:79966200-79970200	Weak transcription	Brain Substantia Nigra	brain
6	chr4:79967000-79970000	Enhancers	Fetal Heart	heart
7	chr4:79967600-79970000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr4:79967800-79968800	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:79967800-79968800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:79967800-79969400	Weak transcription	Fetal Lung	lung
11	chr4:79967800-79969800	Weak transcription	Fetal Brain Male	brain
12	chr4:79967800-79969800	Weak transcription	Fetal Stomach	stomach
13	chr4:79967800-79969800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr4:79967800-79970000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr4:79967800-79970000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:79967800-79971400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr4:79967800-79971600	Weak transcription	Fetal Brain Female	brain
18	chr4:79967800-79979600	Weak transcription	Aorta	Aorta
19	chr4:79968000-79973800	Weak transcription	Fetal Intestine Small	intestine
20	chr4:79968600-79971000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:79968600-79971200	Enhancers	Rectal Smooth Muscle	rectum

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