Variant report

Variant	rs72870858
Chromosome Location	chr4:80202470-80202471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59738409	1.00[AMR][1000 genomes]
rs72864099	1.00[AMR][1000 genomes]
rs72864101	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000907	chr4:79838948-80224764	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80195200-80203200	Weak transcription	Aorta	Aorta
2	chr4:80195800-80203200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr4:80197600-80202600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr4:80197600-80202800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:80201000-80204200	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr4:80202200-80203800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr4:80202200-80203800	Enhancers	Fetal Heart	heart
8	chr4:80202200-80204000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr4:80202200-80204400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:80202400-80202800	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:80202400-80203000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:80202400-80204400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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