Variant report

Variant	rs72865442
Chromosome Location	chr2:30905275-30905276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs6741165	0.86[AFR][1000 genomes]
rs6749665	0.81[AFR][1000 genomes]
rs72863101	0.89[AFR][1000 genomes]
rs72865407	0.89[AFR][1000 genomes]
rs72865413	0.92[AFR][1000 genomes]
rs72865417	0.81[AFR][1000 genomes]
rs72865427	0.81[AFR][1000 genomes]
rs72865432	0.81[AFR][1000 genomes]
rs72865444	1.00[AFR][1000 genomes]
rs72865447	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30897400-30909600	Weak transcription	Aorta	Aorta
2	chr2:30902400-30954000	Weak transcription	Gastric	stomach
3	chr2:30902600-30912000	Weak transcription	Spleen	Spleen
4	chr2:30902600-30915600	Weak transcription	NHDF-Ad	bronchial
5	chr2:30903000-30907000	Weak transcription	Fetal Brain Female	brain
6	chr2:30903800-30906400	Weak transcription	Fetal Brain Male	brain
7	chr2:30904000-30907000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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