Variant report

Variant	rs6741165
Chromosome Location	chr2:30893096-30893097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs6749665	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72856627	1.00[AMR][1000 genomes]
rs72856629	1.00[AMR][1000 genomes]
rs72856655	1.00[AMR][1000 genomes]
rs72863013	1.00[AMR][1000 genomes]
rs72863101	0.83[AFR][1000 genomes]
rs72865407	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72865413	0.86[AFR][1000 genomes]
rs72865417	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72865427	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72865432	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72865442	0.86[AFR][1000 genomes]
rs72865444	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72865447	1.00[AMR][1000 genomes]
rs7563318	1.00[AMR][1000 genomes]
rs7597400	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30889000-30902200	Weak transcription	Gastric	stomach
2	chr2:30892600-30893600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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