Variant report

Variant	rs7597400
Chromosome Location	chr2:30881170-30881171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs6741165	1.00[AMR][1000 genomes]
rs6749665	1.00[AMR][1000 genomes]
rs72856627	1.00[AMR][1000 genomes]
rs72856629	1.00[AMR][1000 genomes]
rs72856655	1.00[AMR][1000 genomes]
rs72863013	1.00[AMR][1000 genomes]
rs72863101	0.86[AFR][1000 genomes]
rs72865407	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72865413	0.82[AFR][1000 genomes]
rs72865417	1.00[AMR][1000 genomes]
rs72865427	1.00[AMR][1000 genomes]
rs72865432	1.00[AMR][1000 genomes]
rs72865444	1.00[AMR][1000 genomes]
rs72865447	1.00[AMR][1000 genomes]
rs7563318	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30863600-30882200	Weak transcription	Ovary	ovary
2	chr2:30878400-30881200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:30879000-30884600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:30879200-30883800	Weak transcription	Psoas Muscle	Psoas
5	chr2:30879200-30884600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:30879200-30884600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr2:30879400-30884400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr2:30879400-30885400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:30879600-30883600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr2:30879800-30881400	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr2:30879800-30882800	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:30879800-30884400	Weak transcription	NHDF-Ad	bronchial
13	chr2:30880000-30883600	Weak transcription	HSMMtube	muscle
14	chr2:30881000-30881600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:30881000-30885400	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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