Variant report

Variant	rs72872103
Chromosome Location	chr4:89743953-89743954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11941615	1.00[AMR][1000 genomes]
rs72872106	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72872111	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72872114	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72872122	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72872139	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72872161	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72872187	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72874108	1.00[AMR][1000 genomes]
rs72874112	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89724400-89744000	Weak transcription	Lung	lung
2	chr4:89740600-89745200	Active TSS	Fetal Intestine Small	intestine
3	chr4:89741000-89744600	Flanking Active TSS	Primary T cells from cord blood	blood
4	chr4:89741000-89745000	Active TSS	Ovary	ovary
5	chr4:89741000-89745200	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr4:89741000-89745200	Active TSS	Stomach Smooth Muscle	stomach
7	chr4:89741200-89744600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
8	chr4:89741200-89745200	Active TSS	Colonic Mucosa	Colon
9	chr4:89741200-89745200	Active TSS	Fetal Intestine Large	intestine
10	chr4:89741200-89745200	Active TSS	Fetal Stomach	stomach
11	chr4:89741400-89744000	Active TSS	Rectal Smooth Muscle	rectum
12	chr4:89741400-89745000	Active TSS	Primary T killer memory cells from peripheral blood	blood
13	chr4:89741400-89745200	Active TSS	Brain Angular Gyrus	brain
14	chr4:89741400-89745200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:89741400-89745400	Active TSS	K562	blood
16	chr4:89741600-89744200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr4:89741600-89744200	Active TSS	Placenta	Placenta
18	chr4:89741600-89744600	Active TSS	Fetal Brain Female	brain
19	chr4:89741600-89745000	Active TSS	Primary T helper naive cells from peripheral blood	blood
20	chr4:89741600-89745000	Active TSS	Brain Germinal Matrix	brain
21	chr4:89741600-89745200	Active TSS	Brain Anterior Caudate	brain
22	chr4:89741600-89745200	Active TSS	Brain Inferior Temporal Lobe	brain
23	chr4:89741800-89744200	Active TSS	Primary T cells fromperipheralblood	blood
24	chr4:89741800-89744200	Active TSS	Fetal Muscle Trunk	muscle
25	chr4:89741800-89744400	Active TSS	Fetal Brain Male	brain
26	chr4:89741800-89745000	Active TSS	Psoas Muscle	Psoas
27	chr4:89742000-89744000	Weak transcription	Small Intestine	intestine
28	chr4:89742000-89745200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:89742000-89745200	Active TSS	Aorta	Aorta
30	chr4:89742000-89745200	Active TSS	Brain Substantia Nigra	brain
31	chr4:89742200-89744000	Active TSS	Rectal Mucosa Donor 31	rectum
32	chr4:89742200-89744200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr4:89742200-89745200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr4:89742200-89745200	Active TSS	Duodenum Mucosa	Duodenum
35	chr4:89742200-89745200	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr4:89742400-89744000	Weak transcription	Gastric	stomach
37	chr4:89742400-89744000	Active TSS	HepG2	liver
38	chr4:89742400-89744200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr4:89742400-89744200	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr4:89742400-89744800	Active TSS	Fetal Kidney	kidney
41	chr4:89742400-89745000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:89742400-89745000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr4:89742400-89745000	Active TSS	Fetal Lung	lung
44	chr4:89742400-89745000	Active TSS	Right Ventricle	heart
45	chr4:89742400-89745000	Active TSS	Hela-S3	cervix
46	chr4:89742400-89745200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:89742400-89745200	Active TSS	Cortex derived primary cultured neurospheres	brain
48	chr4:89742400-89745200	Active TSS	Brain Hippocampus Middle	brain
49	chr4:89742400-89745200	Active TSS	Right Atrium	heart
50	chr4:89742400-89745200	Active TSS	A549	lung

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