Variant report

Variant	rs72874108
Chromosome Location	chr4:89802233-89802234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11941615	1.00[AMR][1000 genomes]
rs72872103	1.00[AMR][1000 genomes]
rs72872106	1.00[AMR][1000 genomes]
rs72872111	1.00[AMR][1000 genomes]
rs72872114	1.00[AMR][1000 genomes]
rs72872122	1.00[AMR][1000 genomes]
rs72872139	1.00[AMR][1000 genomes]
rs72872161	1.00[AMR][1000 genomes]
rs72872187	1.00[AMR][1000 genomes]
rs72874112	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv998651	chr4:89800245-89933445	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv537175	chr4:89800245-89933445	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89771000-89803200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:89798800-89802800	Enhancers	HepG2	liver
3	chr4:89800000-89802800	Enhancers	Fetal Intestine Small	intestine
4	chr4:89800200-89802400	Enhancers	Fetal Intestine Large	intestine
5	chr4:89800600-89802600	Enhancers	Fetal Muscle Leg	muscle
6	chr4:89800600-89802600	Enhancers	Pancreas	Pancrea
7	chr4:89800800-89802400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr4:89800800-89802400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr4:89800800-89802600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:89801000-89803400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr4:89801200-89802400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:89801200-89802600	Enhancers	Ovary	ovary
13	chr4:89801200-89802800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:89801200-89802800	Enhancers	Placenta	Placenta
15	chr4:89801400-89802600	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr4:89801400-89802600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr4:89801400-89802600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr4:89801400-89802600	Enhancers	K562	blood
19	chr4:89801400-89804000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr4:89801600-89802400	Enhancers	Adipose Nuclei	Adipose
21	chr4:89801600-89802400	Enhancers	NHDF-Ad	bronchial
22	chr4:89801600-89802600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr4:89801600-89802600	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr4:89801600-89802600	Enhancers	Lung	lung
25	chr4:89801800-89802400	Weak transcription	HSMMtube	muscle
26	chr4:89801800-89802400	Enhancers	Osteobl	bone
27	chr4:89801800-89810600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr4:89802000-89802400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr4:89802000-89802400	Enhancers	Rectal Smooth Muscle	rectum
30	chr4:89802000-89802600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr4:89802000-89802600	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr4:89802000-89802600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr4:89802000-89802600	Enhancers	Dnd41	blood
34	chr4:89802000-89802800	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr4:89802200-89802600	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr4:89802200-89802600	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr4:89802200-89802600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr4:89802200-89802600	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr4:89802200-89802600	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr4:89802200-89802800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:89802200-89802800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr4:89802200-89803000	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr4:89802200-89820600	Weak transcription	Aorta	Aorta

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