Variant report

Variant	rs72874622
Chromosome Location	chr2:172137046-172137047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs13382769	0.85[EUR][1000 genomes]
rs4668381	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55686118	0.85[EUR][1000 genomes]
rs55982809	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56403470	0.89[AMR][1000 genomes]
rs72874628	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72874632	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9750596	0.95[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172129000-172138800	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:172136400-172137200	Enhancers	HepG2	liver
3	chr2:172136800-172138000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr2:172137000-172139000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links