Variant report

Variant	rs55982809
Chromosome Location	chr2:172146647-172146648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4668381	0.93[EUR][1000 genomes]
rs56403470	0.81[AMR][1000 genomes]
rs72874622	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72874628	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72874632	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73976130	0.84[ASN][1000 genomes]
rs9750596	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs55982809	CYBRD1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172143600-172147200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:172144000-172149600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr2:172144000-172154200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr2:172144200-172149800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:172144200-172171200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:172144400-172146800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:172144400-172150000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:172144600-172149800	Weak transcription	NHEK	skin
9	chr2:172146400-172146800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:172146400-172147200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:172146400-172149800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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