Variant report

Variant	rs73976130
Chromosome Location	chr2:172102814-172102815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55982809	0.84[ASN][1000 genomes]
rs72874628	0.84[ASN][1000 genomes]
rs9750596	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3382346	chr2:172062677-172363892	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172096000-172104000	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr2:172101000-172103000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
3	chr2:172101800-172103200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:172102000-172103000	ZNF genes & repeats	K562	blood
5	chr2:172102200-172103800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:172102200-172104000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr2:172102400-172103200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:172102600-172104600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:172102800-172103000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr2:172102800-172104000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:172102800-172104600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr2:172102800-172127400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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