Variant report

Variant	rs72874698
Chromosome Location	chr2:50323648-50323649
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1037428	0.86[ASN][1000 genomes]
rs10490240	0.84[ASN][1000 genomes]
rs10490244	0.83[ASN][1000 genomes]
rs10865243	0.91[ASN][1000 genomes]
rs11125285	0.81[AMR][1000 genomes]
rs11125288	0.87[ASN][1000 genomes]
rs11125289	0.84[ASN][1000 genomes]
rs11125290	0.84[ASN][1000 genomes]
rs11125291	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11125292	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11125294	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11883844	0.87[ASN][1000 genomes]
rs11887484	0.91[ASN][1000 genomes]
rs11898302	0.91[ASN][1000 genomes]
rs11901625	0.90[ASN][1000 genomes]
rs12151722	0.87[ASN][1000 genomes]
rs12151727	0.87[ASN][1000 genomes]
rs12465888	0.87[ASN][1000 genomes]
rs12468151	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12468252	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12468342	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12468396	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12469244	0.90[ASN][1000 genomes]
rs12473119	0.99[ASN][1000 genomes]
rs12474335	0.96[ASN][1000 genomes]
rs12476530	0.83[ASN][1000 genomes]
rs12477934	1.00[ASN][1000 genomes]
rs12478732	0.87[ASN][1000 genomes]
rs12479057	0.86[ASN][1000 genomes]
rs12613266	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12620250	0.84[ASN][1000 genomes]
rs12622844	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12622858	0.87[ASN][1000 genomes]
rs1452778	0.99[ASN][1000 genomes]
rs1452779	1.00[ASN][1000 genomes]
rs1452780	0.99[ASN][1000 genomes]
rs1452781	1.00[ASN][1000 genomes]
rs1452783	1.00[ASN][1000 genomes]
rs1517827	0.81[ASN][1000 genomes]
rs1563024	0.95[ASN][1000 genomes]
rs1563026	0.99[ASN][1000 genomes]
rs1563027	0.99[ASN][1000 genomes]
rs1584763	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17039801	1.00[ASN][1000 genomes]
rs17039807	1.00[ASN][1000 genomes]
rs17039848	0.91[ASN][1000 genomes]
rs17039863	0.86[ASN][1000 genomes]
rs17039900	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17039905	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17039932	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17039935	0.86[ASN][1000 genomes]
rs17039940	0.84[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17039947	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17039985	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1840074	0.91[ASN][1000 genomes]
rs1880075	0.91[ASN][1000 genomes]
rs1961358	1.00[ASN][1000 genomes]
rs2011317	1.00[ASN][1000 genomes]
rs2045003	0.99[ASN][1000 genomes]
rs4032305	0.91[ASN][1000 genomes]
rs4641977	0.97[ASN][1000 genomes]
rs4971554	1.00[ASN][1000 genomes]
rs4971556	0.91[ASN][1000 genomes]
rs4971646	0.83[ASN][1000 genomes]
rs4971648	0.93[ASN][1000 genomes]
rs4971649	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs57366806	0.87[ASN][1000 genomes]
rs61035060	0.84[ASN][1000 genomes]
rs6716404	0.91[ASN][1000 genomes]
rs6731360	0.91[ASN][1000 genomes]
rs72874683	1.00[ASN][1000 genomes]
rs72878113	0.95[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs72878157	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72878159	0.87[ASN][1000 genomes]
rs72881242	0.83[ASN][1000 genomes]
rs7590544	0.91[ASN][1000 genomes]
rs7607863	0.84[ASN][1000 genomes]
rs896683	0.90[ASN][1000 genomes]
rs896684	0.91[ASN][1000 genomes]
rs896685	0.91[ASN][1000 genomes]
rs962332	0.83[ASN][1000 genomes]
rs962333	0.83[ASN][1000 genomes]
rs9917277	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv932915	chr2:50306630-50628415	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2755683	chr2:50307245-50345280	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2756107	chr2:50307245-50440043	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv948833	chr2:50307245-50459077	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2756536	chr2:50313811-50375695	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50319200-50329800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links