Variant report

Variant	rs962332
Chromosome Location	chr2:50305055-50305056
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1037428	0.81[EUR][1000 genomes]
rs10490241	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs10490243	1.00[CEU][hapmap]
rs10490244	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11125285	0.84[ASN][1000 genomes]
rs11125290	0.80[CEU][hapmap]
rs11125291	0.80[CEU][hapmap]
rs11125294	0.81[CEU][hapmap]
rs11888330	0.81[CEU][hapmap]
rs12151722	0.80[EUR][1000 genomes]
rs12466807	0.81[CEU][hapmap]
rs12468252	0.81[CEU][hapmap]
rs12470002	1.00[CEU][hapmap]
rs12470518	0.87[ASN][1000 genomes]
rs12472712	1.00[CEU][hapmap]
rs12472743	0.93[CEU][hapmap]
rs12473119	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12474335	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12476530	1.00[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12476825	1.00[CEU][hapmap];0.91[YRI][hapmap]
rs12477934	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12478603	0.93[CEU][hapmap]
rs12478732	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs12613363	1.00[CEU][hapmap]
rs12622858	0.93[CEU][hapmap]
rs12986904	1.00[CEU][hapmap]
rs1377233	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1377237	1.00[CEU][hapmap]
rs1452766	0.86[EUR][1000 genomes]
rs1452767	0.86[EUR][1000 genomes]
rs1452768	0.85[EUR][1000 genomes]
rs1452771	0.81[CEU][hapmap]
rs1452773	0.88[ASN][1000 genomes]
rs1452778	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1452779	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1452780	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1452781	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1452783	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1563024	1.00[CEU][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1563026	1.00[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1563027	1.00[CEU][hapmap];0.87[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17039764	1.00[CEU][hapmap]
rs17039801	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17039807	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17039976	0.81[CEU][hapmap]
rs17039985	0.81[CEU][hapmap]
rs17040013	0.81[CEU][hapmap]
rs17040034	0.81[CEU][hapmap]
rs17040090	0.86[CEU][hapmap]
rs17040138	0.81[CEU][hapmap]
rs17040141	0.81[CEU][hapmap]
rs17040169	0.81[CEU][hapmap]
rs17040210	0.93[CEU][hapmap]
rs1961358	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2011317	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2045003	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2123388	1.00[CEU][hapmap]
rs2218979	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4032305	0.85[AMR][1000 genomes]
rs4641977	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4971552	0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4971554	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4971646	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4971648	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs4971650	0.81[CEU][hapmap]
rs4971653	0.81[CEU][hapmap]
rs4971656	0.81[CEU][hapmap]
rs4971658	0.81[CEU][hapmap]
rs4971659	0.81[CEU][hapmap]
rs6545149	1.00[CEU][hapmap]
rs6545155	0.94[CEU][hapmap]
rs72874683	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72874698	0.83[ASN][1000 genomes]
rs72878120	0.81[EUR][1000 genomes]
rs72878122	0.81[EUR][1000 genomes]
rs7599349	0.81[CEU][hapmap]
rs7607863	0.81[CEU][hapmap]
rs896683	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs896684	0.94[CEU][hapmap]
rs930752	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs962333	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970896	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs9917277	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50304600-50305400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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