Variant report

Variant	rs970896
Chromosome Location	chr2:50308985-50308986
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10490241	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs10490243	0.89[CEU][hapmap];0.81[JPT][hapmap]
rs10490244	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11125285	0.83[ASN][1000 genomes]
rs12470002	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs12470518	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs12472712	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs12472743	0.95[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[TSI][hapmap]
rs12473119	1.00[CEU][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12474335	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12476530	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12476825	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs12477934	1.00[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12478603	0.90[CEU][hapmap]
rs12478732	0.95[CEU][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap]
rs12613363	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs12622858	0.95[CEU][hapmap];0.97[GIH][hapmap];0.88[TSI][hapmap]
rs12986904	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs1377233	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs1377237	1.00[CEU][hapmap]
rs1421573	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs1452766	0.85[EUR][1000 genomes]
rs1452767	0.85[EUR][1000 genomes]
rs1452768	0.84[EUR][1000 genomes]
rs1452773	0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1452778	1.00[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1452779	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1452780	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1452781	1.00[CEU][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1452783	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1563024	0.89[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1563026	0.94[ASW][hapmap];1.00[CEU][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1563027	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17039764	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs17039801	1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17039807	1.00[CEU][hapmap];0.85[JPT][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17040034	0.81[CHB][hapmap]
rs17040064	0.81[CHB][hapmap]
rs17040210	0.84[CEU][hapmap]
rs1961358	1.00[CEU][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2011317	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2045003	1.00[CEU][hapmap];0.81[CHD][hapmap];0.97[GIH][hapmap];0.85[JPT][hapmap];0.94[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2123388	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs2218979	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs4032305	0.88[AMR][1000 genomes]
rs4641977	1.00[CEU][hapmap];0.84[JPT][hapmap];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4971552	0.89[ASW][hapmap];0.86[JPT][hapmap];0.97[LWK][hapmap];0.82[MKK][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes]
rs4971554	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4971646	1.00[CEU][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4971648	0.95[CEU][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap]
rs6545149	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap]
rs6545155	0.90[CEU][hapmap]
rs6716404	0.89[GIH][hapmap]
rs6731397	0.81[CHB][hapmap]
rs72874683	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72874698	0.84[ASN][1000 genomes]
rs896683	0.95[CEU][hapmap];1.00[GIH][hapmap];0.94[TSI][hapmap];0.80[EUR][1000 genomes]
rs896684	0.95[CEU][hapmap]
rs921572	0.81[CEU][hapmap];0.89[GIH][hapmap];0.87[TSI][hapmap]
rs921573	0.81[CEU][hapmap];0.89[GIH][hapmap];0.81[TSI][hapmap]
rs930752	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs962332	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs962333	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv932915	chr2:50306630-50628415	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2755683	chr2:50307245-50345280	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2756107	chr2:50307245-50440043	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv948833	chr2:50307245-50459077	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links