Variant report

Variant	rs1452773
Chromosome Location	chr2:50277949-50277950
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10490244	0.88[ASN][1000 genomes]
rs11125285	0.82[ASN][1000 genomes]
rs11125294	0.80[CEU][hapmap]
rs11125295	0.85[CHB][hapmap]
rs11125296	0.85[CHB][hapmap]
rs11888330	0.83[CHB][hapmap]
rs11896556	0.81[CHB][hapmap]
rs12466807	0.80[CEU][hapmap];0.80[CHB][hapmap]
rs12468252	0.80[CEU][hapmap]
rs12470518	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12472712	0.80[CHB][hapmap];0.81[JPT][hapmap]
rs12472743	0.90[JPT][hapmap]
rs12475100	0.90[CHB][hapmap]
rs12476530	0.90[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs12478603	0.84[CHB][hapmap]
rs12613363	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs1421573	0.87[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs1452769	0.84[CHB][hapmap]
rs1452771	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs1563019	0.85[CHB][hapmap]
rs1563028	0.85[CHB][hapmap]
rs17039718	0.92[ASN][1000 genomes]
rs17039764	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs17039976	0.80[CEU][hapmap]
rs17039985	0.80[CEU][hapmap]
rs17040013	0.80[CEU][hapmap]
rs17040034	0.80[CEU][hapmap];0.95[CHB][hapmap]
rs17040064	0.95[CHB][hapmap]
rs17040090	0.81[CHB][hapmap]
rs17040123	0.85[CHB][hapmap]
rs17040138	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs17040141	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs17040147	0.85[CHB][hapmap]
rs17040160	0.85[CHB][hapmap]
rs17040169	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs17040210	0.84[CHB][hapmap]
rs2218979	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs4971552	0.85[JPT][hapmap]
rs4971646	0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4971650	0.80[CEU][hapmap]
rs4971652	0.85[CHB][hapmap]
rs4971653	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs4971655	0.85[CHB][hapmap]
rs4971656	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs4971658	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs4971659	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs6545149	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs6545155	0.85[CHB][hapmap]
rs6712102	0.80[CEU][hapmap];0.81[CHB][hapmap]
rs6712423	0.89[CHB][hapmap]
rs6731397	0.95[CHB][hapmap]
rs7599349	0.80[CEU][hapmap];0.85[CHB][hapmap]
rs7607863	0.80[CEU][hapmap]
rs962332	0.88[ASN][1000 genomes]
rs962333	0.88[ASN][1000 genomes]
rs970896	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50277600-50278600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr2:50277600-50280600	Weak transcription	Fetal Intestine Small	intestine
3	chr2:50277800-50278800	Weak transcription	Fetal Intestine Large	intestine

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