Variant report

Variant	rs7287943
Chromosome Location	chr22:30892555-30892556
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:30820081..30823077-chr22:30890155..30892931,2	MCF-7	breast:
2	chr22:30884994..30887609-chr22:30891940..30894368,2	K562	blood:
3	chr22:30888262..30890131-chr22:30891549..30894001,2	K562	blood:

Variant related genes	Relation type
ENSG00000242114	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1001409	0.90[EUR][1000 genomes]
rs13053262	0.95[EUR][1000 genomes]
rs13054004	0.91[EUR][1000 genomes]
rs13750	0.96[EUR][1000 genomes]
rs17670707	0.93[EUR][1000 genomes]
rs17670808	0.96[EUR][1000 genomes]
rs17738527	0.96[EUR][1000 genomes]
rs17738540	0.96[EUR][1000 genomes]
rs1807514	0.91[ASN][1000 genomes]
rs1986969	0.84[EUR][1000 genomes]
rs2023967	0.86[EUR][1000 genomes]
rs2189835	0.93[EUR][1000 genomes]
rs35102600	0.85[EUR][1000 genomes]
rs35841307	0.88[EUR][1000 genomes]
rs4602314	0.85[EUR][1000 genomes]
rs5749111	0.86[AFR][1000 genomes]
rs6518692	0.97[ASN][1000 genomes]
rs6518698	0.94[ASN][1000 genomes]
rs7284873	0.90[EUR][1000 genomes]
rs7286523	0.85[EUR][1000 genomes]
rs7286807	0.85[EUR][1000 genomes]
rs7287003	0.86[EUR][1000 genomes]
rs7289277	0.91[EUR][1000 genomes]
rs7289820	0.91[EUR][1000 genomes]
rs7289828	0.90[EUR][1000 genomes]
rs7292573	0.89[EUR][1000 genomes]
rs737940	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs737942	0.91[EUR][1000 genomes]
rs8137267	0.95[EUR][1000 genomes]
rs8137718	0.96[EUR][1000 genomes]
rs8138759	0.96[EUR][1000 genomes]
rs8141318	0.85[EUR][1000 genomes]
rs8141671	0.96[EUR][1000 genomes]
rs878306	0.97[ASN][1000 genomes]
rs9606735	0.96[EUR][1000 genomes]
rs9606736	0.96[EUR][1000 genomes]
rs9606738	0.96[EUR][1000 genomes]
rs9606739	0.96[EUR][1000 genomes]
rs9606746	0.90[EUR][1000 genomes]
rs9608936	0.93[EUR][1000 genomes]
rs9608941	0.96[EUR][1000 genomes]
rs9608942	0.94[EUR][1000 genomes]
rs9608944	0.95[EUR][1000 genomes]
rs9608946	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9608955	0.91[EUR][1000 genomes]
rs9608968	0.91[EUR][1000 genomes]
rs9608972	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
3	esv3413089	chr22:30888110-30921604	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30874600-30894000	Weak transcription	Right Atrium	heart
2	chr22:30883400-30901200	Weak transcription	A549	lung
3	chr22:30886400-30893600	Weak transcription	Lung	lung
4	chr22:30891800-30901200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:30892000-30892600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links