Variant report

Variant	rs72882724
Chromosome Location	chr6:64307574-64307575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:64307384..64309473-chr6:64334583..64337195,2	K562	blood:
2	chr6:64306565..64309753-chr6:64343946..64347831,5	K562	blood:
3	chr6:64299036..64303200-chr6:64306803..64309022,3	K562	blood:
4	chr6:64303581..64305440-chr6:64306107..64308882,2	K562	blood:
5	chr6:64281185..64283596-chr6:64306187..64309666,3	MCF-7	breast:
6	chr6:64307189..64310027-chr6:64312721..64315208,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118482	Chromatin interaction
ENSG00000112245	Chromatin interaction
ENSG00000266680	Chromatin interaction

rs_ID	r²[population]
rs72880893	1.00[AMR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64284800-64307600	Weak transcription	Fetal Stomach	stomach
2	chr6:64290400-64307600	Weak transcription	Brain Angular Gyrus	brain
3	chr6:64290400-64307600	Weak transcription	Brain Substantia Nigra	brain
4	chr6:64290600-64307600	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:64291200-64307600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:64291400-64307800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:64291800-64307600	Weak transcription	Fetal Brain Female	brain
8	chr6:64294600-64307600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:64302800-64307800	Weak transcription	Fetal Brain Male	brain
10	chr6:64306200-64307600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:64306200-64307600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:64306200-64307600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:64306400-64307600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:64306400-64307600	Weak transcription	Liver	Liver
15	chr6:64306400-64307800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:64307200-64307600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr6:64307400-64307600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:64307400-64307600	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr6:64307400-64307600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr6:64307400-64307600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:64307400-64307600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:64307400-64307600	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr6:64307400-64307600	Weak transcription	A549	lung
24	chr6:64307400-64307600	Enhancers	HepG2	liver
25	chr6:64307400-64308000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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