Variant report

Variant	rs72883596
Chromosome Location	chr2:181879105-181879106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:181874638..181877182-chr2:181878680..181881329,2	MCF-7	breast:
2	chr2:181876866..181879507-chr2:181882393..181884603,2	MCF-7	breast:
3	chr2:181862519..181864415-chr2:181878590..181880597,2	K562	blood:
4	chr2:181844258..181846678-chr2:181878655..181880480,2	K562	blood:

Variant related genes	Relation type
ENSG00000170035	Chromatin interaction
ENSG00000236153	Chromatin interaction

rs_ID	r²[population]
rs72883585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72885290	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890513	1.00[AMR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181849400-181880000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr2:181856800-181897200	Weak transcription	Primary B cells from cord blood	blood
3	chr2:181857600-181879200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr2:181857800-181901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:181860000-181894800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:181867800-181881400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr2:181869400-181879800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:181871000-181886600	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:181871200-181880400	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:181873200-181885000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr2:181873400-181901000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:181873600-181882000	Weak transcription	Pancreas	Pancrea
13	chr2:181873600-181887800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr2:181873600-181889600	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:181875800-181879800	Weak transcription	Primary T cells from cord blood	blood
16	chr2:181876200-181881600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr2:181876200-181882000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr2:181876200-181885000	Weak transcription	Brain Angular Gyrus	brain
19	chr2:181876600-181879600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr2:181877600-181882200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr2:181877600-181882800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr2:181878400-181881800	Weak transcription	Left Ventricle	heart
23	chr2:181878600-181881600	Weak transcription	Psoas Muscle	Psoas
24	chr2:181878800-181881800	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr2:181878800-181883800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links