Variant report
| Variant | rs72887825 |
|---|---|
| Chromosome Location | chr2:50211226-50211227 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10172776 | 1.00[EUR][1000 genomes] |
| rs17039898 | 1.00[EUR][1000 genomes] |
| rs17039997 | 1.00[EUR][1000 genomes] |
| rs2076992 | 1.00[EUR][1000 genomes] |
| rs58188895 | 1.00[EUR][1000 genomes] |
| rs58300345 | 1.00[EUR][1000 genomes] |
| rs58725798 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6545141 | 1.00[EUR][1000 genomes] |
| rs6545143 | 1.00[EUR][1000 genomes] |
| rs6715111 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72878105 | 1.00[EUR][1000 genomes] |
| rs72878125 | 1.00[EUR][1000 genomes] |
| rs72881239 | 1.00[EUR][1000 genomes] |
| rs72881247 | 1.00[EUR][1000 genomes] |
| rs72882291 | 1.00[EUR][1000 genomes] |
| rs72885837 | 1.00[EUR][1000 genomes] |
| rs72885901 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72887804 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72887806 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72887808 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72887814 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72887826 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72887828 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7558542 | 1.00[EUR][1000 genomes] |
| rs7570586 | 1.00[EUR][1000 genomes] |
| rs7579486 | 1.00[EUR][1000 genomes] |
| rs7609169 | 1.00[EUR][1000 genomes] |
| rs993509 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3388948 | chr2:50092667-50602681 | Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 2 | esv3399511 | chr2:50092687-50602651 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv934303 | chr2:50145598-50412189 | Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv932839 | chr2:50181785-50225697 | Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv874031 | chr2:50202953-50243386 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:50205600-50212600 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
