Variant report

Variant	rs7609169
Chromosome Location	chr2:50319796-50319797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10172776	1.00[EUR][1000 genomes]
rs17039898	1.00[EUR][1000 genomes]
rs17039997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2076992	1.00[EUR][1000 genomes]
rs58188895	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58725798	1.00[EUR][1000 genomes]
rs6545141	1.00[EUR][1000 genomes]
rs6545143	1.00[EUR][1000 genomes]
rs6715111	1.00[EUR][1000 genomes]
rs72878105	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72878125	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72881239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72881247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72885901	1.00[EUR][1000 genomes]
rs72887804	1.00[EUR][1000 genomes]
rs72887806	1.00[EUR][1000 genomes]
rs72887808	1.00[EUR][1000 genomes]
rs72887814	1.00[EUR][1000 genomes]
rs72887825	1.00[EUR][1000 genomes]
rs72887826	1.00[EUR][1000 genomes]
rs72887828	1.00[EUR][1000 genomes]
rs7558542	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7570586	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7579486	1.00[EUR][1000 genomes]
rs7580684	1.00[EUR][1000 genomes]
rs7584237	1.00[EUR][1000 genomes]
rs7601070	1.00[EUR][1000 genomes]
rs993509	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388948	chr2:50092667-50602681	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
2	esv3399511	chr2:50092687-50602651	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv934303	chr2:50145598-50412189	Bivalent Enhancer Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv932915	chr2:50306630-50628415	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	esv2755683	chr2:50307245-50345280	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv2756107	chr2:50307245-50440043	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv948833	chr2:50307245-50459077	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv2756536	chr2:50313811-50375695	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:50318600-50320200	Weak transcription	Brain Germinal Matrix	brain
2	chr2:50319200-50329800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:50319400-50319800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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