Variant report

Variant	rs7289112
Chromosome Location	chr22:28753495-28753496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4638899	0.86[AFR][1000 genomes]
rs56989664	1.00[AFR][1000 genomes]
rs60298528	1.00[AFR][1000 genomes]
rs7293033	0.86[AFR][1000 genomes]
rs9608675	0.86[AFR][1000 genomes]
rs9613601	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28741600-28759000	Weak transcription	Fetal Stomach	stomach
2	chr22:28742800-28759600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr22:28743000-28759000	Weak transcription	Dnd41	blood
4	chr22:28745200-28754400	Weak transcription	Brain Anterior Caudate	brain
5	chr22:28746200-28754200	Weak transcription	Fetal Heart	heart
6	chr22:28748000-28755800	Weak transcription	Fetal Intestine Small	intestine
7	chr22:28748000-28759600	Weak transcription	Fetal Lung	lung
8	chr22:28748200-28754200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr22:28748800-28754200	Weak transcription	Fetal Brain Male	brain
10	chr22:28752000-28754400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:28752400-28754000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr22:28752800-28753800	Weak transcription	Fetal Brain Female	brain
13	chr22:28752800-28754200	Weak transcription	Right Ventricle	heart
14	chr22:28752800-28759000	Weak transcription	Ovary	ovary
15	chr22:28752800-28768600	Weak transcription	Left Ventricle	heart
16	chr22:28753200-28755000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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