Variant report

Variant	rs9608675
Chromosome Location	chr22:28660525-28660526
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12484825	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17409164	0.85[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17409195	1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4638899	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56989664	0.86[AFR][1000 genomes]
rs60298528	0.86[AFR][1000 genomes]
rs7289112	0.86[AFR][1000 genomes]
rs7293033	1.00[YRI][hapmap]
rs738398	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9608672	0.82[AMR][1000 genomes]
rs9613568	0.90[GIH][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap]
rs9613573	0.90[GIH][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.89[AMR][1000 genomes]
rs9613575	0.80[AMR][1000 genomes]
rs9613589	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9613590	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9613601	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs9613613	0.85[CEU][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28618400-28662200	Weak transcription	Pancreas	Pancrea
2	chr22:28644200-28661400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr22:28644400-28662400	Weak transcription	Psoas Muscle	Psoas
4	chr22:28646000-28664000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr22:28651600-28663000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr22:28651800-28690600	Weak transcription	Dnd41	blood
7	chr22:28653000-28664200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr22:28653000-28665000	Weak transcription	Fetal Muscle Leg	muscle
9	chr22:28653000-28671600	Weak transcription	Fetal Stomach	stomach
10	chr22:28656000-28661200	Weak transcription	Aorta	Aorta
11	chr22:28656200-28662400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr22:28656800-28666000	Weak transcription	Small Intestine	intestine
13	chr22:28657000-28662400	Weak transcription	Adipose Nuclei	Adipose
14	chr22:28657000-28664200	Weak transcription	Brain Angular Gyrus	brain
15	chr22:28657000-28691600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr22:28657200-28662600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr22:28657200-28664000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr22:28659400-28671200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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