Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11090520	1.00[AFR][1000 genomes]
rs12484825	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17409195	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4638899	0.85[EUR][1000 genomes]
rs738398	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs738474	1.00[AFR][1000 genomes]
rs9608663	1.00[AFR][1000 genomes]
rs9608666	1.00[AFR][1000 genomes]
rs9608672	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9608675	0.85[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9613552	1.00[AFR][1000 genomes]
rs9613558	1.00[AFR][1000 genomes]
rs9613560	1.00[AFR][1000 genomes]
rs9613569	1.00[AFR][1000 genomes]
rs9613573	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9613575	0.86[AMR][1000 genomes]
rs9613589	0.87[CEU][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9613590	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9613591	0.85[CEU][hapmap];1.00[AFR][1000 genomes]
rs9613601	0.85[EUR][1000 genomes]
rs9613613	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28612200-28634800	Weak transcription	Dnd41	blood
2	chr22:28618400-28639600	Weak transcription	Ovary	ovary
3	chr22:28618400-28662200	Weak transcription	Pancreas	Pancrea
4	chr22:28620400-28639200	Weak transcription	Left Ventricle	heart
5	chr22:28628000-28639400	Weak transcription	Fetal Heart	heart
6	chr22:28628200-28643200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr22:28628600-28639000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr22:28628600-28640800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr22:28628600-28640800	Weak transcription	NHLF	lung
10	chr22:28631400-28640800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr22:28632200-28640200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr22:28632400-28640800	Weak transcription	Aorta	Aorta
13	chr22:28633600-28639600	Weak transcription	HSMM	muscle
14	chr22:28633600-28640800	Weak transcription	HSMMtube	muscle
15	chr22:28633800-28635000	Weak transcription	Osteobl	bone
16	chr22:28634200-28640800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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