Variant report

Variant	rs9608663
Chromosome Location	chr22:28448272-28448273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:28447496..28448401-chr22:28837962..28838861,4	MCF-7	breast:
2	chr22:28447463..28448665-chr22:28990496..28991323,4	MCF-7	breast:
3	chr22:28447447..28448524-chr22:28837980..28838886,4	K562	blood:
4	chr22:28446750..28449542-chr22:29186576..29188536,2	MCF-7	breast:
5	chr22:28447846..28448403-chr22:28990448..28991276,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11090520	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17409164	1.00[AFR][1000 genomes]
rs17409195	1.00[AFR][1000 genomes]
rs17480516	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17483415	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs738398	1.00[AFR][1000 genomes]
rs738455	0.89[EUR][1000 genomes]
rs738474	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9608665	0.87[EUR][1000 genomes]
rs9608666	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9608672	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs9613549	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9613552	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9613558	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs9613560	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9613564	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9613568	0.91[EUR][1000 genomes]
rs9613569	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9613573	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9613591	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28431200-28449600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr22:28431200-28459600	Weak transcription	Aorta	Aorta
3	chr22:28432000-28469000	Weak transcription	Primary T cells from cord blood	blood
4	chr22:28439600-28449800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr22:28439800-28450000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr22:28440000-28450000	Weak transcription	Ovary	ovary
7	chr22:28440200-28449200	Weak transcription	Colon Smooth Muscle	Colon
8	chr22:28440200-28449800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr22:28440200-28450000	Weak transcription	NHDF-Ad	bronchial
10	chr22:28440400-28449400	Weak transcription	NHLF	lung
11	chr22:28441000-28452200	Weak transcription	Fetal Intestine Large	intestine
12	chr22:28443800-28459200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr22:28444400-28458800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr22:28444600-28448600	Weak transcription	Fetal Kidney	kidney
15	chr22:28444600-28448800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr22:28444600-28449000	Weak transcription	Adipose Nuclei	Adipose
17	chr22:28444600-28449800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr22:28445200-28462200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr22:28445200-28470400	Weak transcription	Pancreas	Pancrea
20	chr22:28445400-28459200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr22:28445400-28470800	Weak transcription	Lung	lung
22	chr22:28445800-28462800	Weak transcription	Left Ventricle	heart
23	chr22:28446200-28458000	Weak transcription	Fetal Intestine Small	intestine
24	chr22:28446200-28467800	Weak transcription	Fetal Muscle Leg	muscle
25	chr22:28446400-28454000	Weak transcription	Dnd41	blood
26	chr22:28447000-28448600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr22:28447000-28449200	Enhancers	Fetal Lung	lung
28	chr22:28447200-28449800	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr22:28447400-28448400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr22:28447600-28448400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr22:28447600-28448800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr22:28447600-28448800	Enhancers	Fetal Brain Female	brain
33	chr22:28447600-28450600	Enhancers	Fetal Brain Male	brain
34	chr22:28447800-28449600	Enhancers	Brain Germinal Matrix	brain
35	chr22:28448000-28448800	Weak transcription	Brain Angular Gyrus	brain
36	chr22:28448000-28449200	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr22:28448000-28449800	Weak transcription	HUVEC	blood vessel
38	chr22:28448200-28448400	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr22:28448200-28448400	Enhancers	Fetal Stomach	stomach
40	chr22:28448200-28448800	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr22:28448200-28449400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr22:28448200-28449600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr22:28448200-28449600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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