Variant report

Variant	rs9613564
Chromosome Location	chr22:28446054-28446055
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11090520	0.90[EUR][1000 genomes]
rs17483415	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs738455	0.80[EUR][1000 genomes]
rs9608663	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9608666	0.86[EUR][1000 genomes]
rs9613549	0.80[EUR][1000 genomes]
rs9613558	0.83[EUR][1000 genomes]
rs9613560	0.86[EUR][1000 genomes]
rs9613568	0.83[EUR][1000 genomes]
rs9613569	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28431200-28449600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr22:28431200-28459600	Weak transcription	Aorta	Aorta
3	chr22:28431600-28447600	Weak transcription	Fetal Brain Female	brain
4	chr22:28432000-28447600	Weak transcription	Fetal Brain Male	brain
5	chr22:28432000-28469000	Weak transcription	Primary T cells from cord blood	blood
6	chr22:28439600-28449800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr22:28439800-28450000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr22:28440000-28447800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr22:28440000-28450000	Weak transcription	Ovary	ovary
10	chr22:28440200-28449200	Weak transcription	Colon Smooth Muscle	Colon
11	chr22:28440200-28449800	Weak transcription	Stomach Smooth Muscle	stomach
12	chr22:28440200-28450000	Weak transcription	NHDF-Ad	bronchial
13	chr22:28440400-28449400	Weak transcription	NHLF	lung
14	chr22:28441000-28452200	Weak transcription	Fetal Intestine Large	intestine
15	chr22:28441400-28448200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr22:28442200-28446400	Strong transcription	Dnd41	blood
17	chr22:28443800-28446400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr22:28443800-28447600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr22:28443800-28459200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr22:28444000-28447200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr22:28444200-28448200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr22:28444400-28458800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr22:28444600-28448600	Weak transcription	Fetal Kidney	kidney
24	chr22:28444600-28448800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr22:28444600-28449000	Weak transcription	Adipose Nuclei	Adipose
26	chr22:28444600-28449800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr22:28445000-28447000	Weak transcription	Fetal Lung	lung
28	chr22:28445200-28447800	Weak transcription	Stomach Mucosa	stomach
29	chr22:28445200-28462200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr22:28445200-28470400	Weak transcription	Pancreas	Pancrea
31	chr22:28445400-28446200	Genic enhancers	Fetal Muscle Leg	muscle
32	chr22:28445400-28459200	Weak transcription	Fetal Muscle Trunk	muscle
33	chr22:28445400-28470800	Weak transcription	Lung	lung
34	chr22:28445600-28446200	Strong transcription	Fetal Stomach	stomach
35	chr22:28445600-28447800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr22:28445800-28446200	Genic enhancers	Fetal Intestine Small	intestine
37	chr22:28445800-28448200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr22:28445800-28462800	Weak transcription	Left Ventricle	heart
39	chr22:28446000-28446600	Enhancers	HepG2	liver

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