Variant report

Variant	rs9608666
Chromosome Location	chr22:28516032-28516033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11090520	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17409164	1.00[AFR][1000 genomes]
rs17409195	1.00[AFR][1000 genomes]
rs17480516	1.00[AFR][1000 genomes]
rs17483415	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs738398	1.00[AFR][1000 genomes]
rs738455	0.84[EUR][1000 genomes]
rs738474	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9608663	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9608665	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9608672	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs9613549	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9613552	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs9613558	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs9613560	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9613564	0.86[EUR][1000 genomes]
rs9613568	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9613569	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs9613573	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9613575	0.83[EUR][1000 genomes]
rs9613591	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28487600-28517200	Weak transcription	Primary hematopoietic stem cells	blood
2	chr22:28496600-28517200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr22:28501600-28517000	Weak transcription	Brain Angular Gyrus	brain
4	chr22:28502400-28535800	Weak transcription	Right Ventricle	heart
5	chr22:28504400-28516400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr22:28508800-28516600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr22:28509000-28517200	Weak transcription	Stomach Mucosa	stomach
8	chr22:28509400-28516400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr22:28509400-28516800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr22:28512800-28516600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr22:28513000-28516400	Weak transcription	Aorta	Aorta
12	chr22:28513000-28516400	Weak transcription	Fetal Lung	lung
13	chr22:28513000-28519000	Weak transcription	Ovary	ovary
14	chr22:28513200-28516400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr22:28513200-28516400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr22:28513200-28516800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr22:28513200-28517800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr22:28513200-28521400	Weak transcription	Fetal Stomach	stomach
19	chr22:28513200-28527400	Weak transcription	Left Ventricle	heart
20	chr22:28513200-28538000	Weak transcription	Dnd41	blood
21	chr22:28513400-28516400	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr22:28513400-28516400	Weak transcription	Fetal Muscle Leg	muscle
23	chr22:28513600-28516200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr22:28513600-28516200	Weak transcription	Osteobl	bone
25	chr22:28513600-28516400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr22:28513600-28516400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr22:28513600-28516400	Weak transcription	HSMM	muscle
28	chr22:28513600-28516400	Weak transcription	NH-A	brain
29	chr22:28513600-28516400	Weak transcription	NHDF-Ad	bronchial
30	chr22:28513600-28516600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr22:28514000-28520000	Weak transcription	NHEK	skin
32	chr22:28514200-28516600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr22:28515000-28516800	Enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr22:28515200-28516400	Weak transcription	Adipose Nuclei	Adipose
35	chr22:28515200-28518200	Enhancers	Fetal Brain Male	brain
36	chr22:28515600-28516600	Weak transcription	Colon Smooth Muscle	Colon
37	chr22:28515600-28516600	Weak transcription	Psoas Muscle	Psoas
38	chr22:28515600-28520200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr22:28515600-28522000	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr22:28515800-28516600	Weak transcription	HSMMtube	muscle
41	chr22:28515800-28516800	Enhancers	Fetal Brain Female	brain
42	chr22:28516000-28516400	Weak transcription	Fetal Heart	heart

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