Variant report

Variant	rs9613591
Chromosome Location	chr22:28706220-28706221
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11090520	1.00[AFR][1000 genomes]
rs17409164	0.85[CEU][hapmap];1.00[AFR][1000 genomes]
rs17409195	1.00[AFR][1000 genomes]
rs4638899	0.83[AMR][1000 genomes]
rs738398	1.00[AFR][1000 genomes]
rs9608663	1.00[AFR][1000 genomes]
rs9608666	1.00[AFR][1000 genomes]
rs9608672	1.00[AFR][1000 genomes]
rs9608690	1.00[AFR][1000 genomes]
rs9613569	1.00[AFR][1000 genomes]
rs9613573	1.00[AFR][1000 genomes]
rs9613589	0.87[AMR][1000 genomes]
rs9613590	0.91[AMR][1000 genomes]
rs9613613	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9613645	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv459866	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv588879	chr22:28540492-28753833	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv526760	chr22:28706220-28719656	Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28693800-28709200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr22:28693800-28710400	Weak transcription	Fetal Stomach	stomach
3	chr22:28693800-28716000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr22:28694600-28711800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr22:28696200-28711800	Weak transcription	Gastric	stomach
6	chr22:28696200-28716000	Weak transcription	Fetal Lung	lung
7	chr22:28702800-28714200	Weak transcription	Dnd41	blood
8	chr22:28705000-28710800	Weak transcription	Stomach Mucosa	stomach
9	chr22:28705000-28711200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr22:28705600-28708000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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