Variant report

Variant	rs9613613
Chromosome Location	chr22:28836928-28836929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:28835448..28837338-chr22:28837546..28840029,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100154	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17409164	1.00[AFR][1000 genomes]
rs17409195	1.00[ASW][hapmap];0.85[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];1.00[AFR][1000 genomes]
rs4638899	0.85[AMR][1000 genomes]
rs738398	1.00[AFR][1000 genomes]
rs9608672	1.00[AFR][1000 genomes]
rs9608675	0.85[CEU][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];0.88[TSI][hapmap]
rs9608690	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9613573	1.00[AFR][1000 genomes]
rs9613589	0.85[CEU][hapmap]
rs9613591	0.82[CEU][hapmap];1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs9613601	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9613605	0.85[AMR][1000 genomes]
rs9613645	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062877	chr22:28163507-28866350	Weak transcription Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1067544	chr22:28755418-29055246	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
3	nsv544674	chr22:28755418-29055246	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv588880	chr22:28807277-29001789	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:28820800-28837400	Weak transcription	HSMMtube	muscle
2	chr22:28822200-28837800	Weak transcription	Left Ventricle	heart
3	chr22:28823000-28837000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr22:28827000-28837000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr22:28827200-28837400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr22:28829400-28837600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr22:28832400-28837000	Weak transcription	Small Intestine	intestine
8	chr22:28832800-28837800	Weak transcription	HMEC	breast
9	chr22:28833400-28840000	Active TSS	Fetal Brain Female	brain
10	chr22:28833600-28837600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr22:28833800-28837600	Weak transcription	Right Atrium	heart
12	chr22:28833800-28838000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr22:28833800-28838000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr22:28834000-28837600	Weak transcription	NHEK	skin
15	chr22:28834000-28837800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr22:28834000-28837800	Weak transcription	Psoas Muscle	Psoas
17	chr22:28834800-28837200	Enhancers	Osteobl	bone
18	chr22:28835000-28837000	Weak transcription	HepG2	liver
19	chr22:28836000-28837000	Enhancers	Colon Smooth Muscle	Colon
20	chr22:28836000-28837400	Enhancers	Fetal Lung	lung
21	chr22:28836000-28837800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr22:28836000-28837800	Flanking Active TSS	Dnd41	blood
23	chr22:28836200-28837400	Active TSS	Fetal Brain Male	brain
24	chr22:28836200-28837600	Enhancers	Primary T cells from cord blood	blood
25	chr22:28836200-28837600	Enhancers	Brain Germinal Matrix	brain
26	chr22:28836200-28837600	Enhancers	NHDF-Ad	bronchial
27	chr22:28836200-28837800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr22:28836200-28837800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr22:28836400-28837000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr22:28836400-28837000	Enhancers	Brain Angular Gyrus	brain
31	chr22:28836400-28837000	Enhancers	Brain Hippocampus Middle	brain
32	chr22:28836400-28837000	Enhancers	Stomach Smooth Muscle	stomach
33	chr22:28836400-28837200	Flanking Active TSS	NHLF	lung
34	chr22:28836400-28837400	Enhancers	Muscle Satellite Cultured Cells	--
35	chr22:28836400-28837400	Enhancers	Duodenum Mucosa	Duodenum
36	chr22:28836400-28837400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr22:28836400-28837400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr22:28836400-28837600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr22:28836400-28837600	Enhancers	Adipose Nuclei	Adipose
40	chr22:28836400-28837600	Enhancers	Liver	Liver
41	chr22:28836400-28837600	Enhancers	Brain Anterior Caudate	brain
42	chr22:28836400-28837600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr22:28836400-28837600	Enhancers	Brain Substantia Nigra	brain
44	chr22:28836400-28837600	Enhancers	Skeletal Muscle Male	skeletal muscle
45	chr22:28836400-28837800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr22:28836400-28837800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr22:28836400-28837800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr22:28836400-28838000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr22:28836400-28838200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr22:28836400-28838600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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