Variant report

Variant	rs72894431
Chromosome Location	chr3:78853731-78853732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72896429	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877019	chr3:78808850-78877217	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv432459	chr3:78819310-78874310	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78844400-78854000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:78850800-78854400	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr3:78850800-78854400	Enhancers	Fetal Lung	lung
4	chr3:78851000-78854600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:78851400-78854000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:78851400-78880400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:78851600-78853800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr3:78851600-78861200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:78852200-78854200	Enhancers	Brain Hippocampus Middle	brain
10	chr3:78852400-78853800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:78852400-78853800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:78852400-78854200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:78852600-78859400	Weak transcription	Brain Anterior Caudate	brain
14	chr3:78852800-78853800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:78853000-78854200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:78853000-78854400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr3:78853000-78854800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:78853000-78855200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr3:78853200-78853800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:78853200-78854400	Enhancers	Adipose Nuclei	Adipose
21	chr3:78853200-78854400	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr3:78853400-78853800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:78853400-78854400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr3:78853600-78854200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:78853600-78854200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr3:78853600-78854200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:78853600-78854200	Enhancers	Fetal Stomach	stomach
28	chr3:78853600-78854400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:78853600-78854400	Enhancers	Brain Substantia Nigra	brain
30	chr3:78853600-78854400	Enhancers	Fetal Kidney	kidney
31	chr3:78853600-78854400	Enhancers	HSMM	muscle
32	chr3:78853600-78854600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr3:78853600-78854600	Enhancers	Colon Smooth Muscle	Colon
34	chr3:78853600-78854800	Enhancers	NHDF-Ad	bronchial

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