Variant report

Variant	rs72896429
Chromosome Location	chr3:78895159-78895160
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17016573	1.00[ASN][1000 genomes]
rs17016593	1.00[ASN][1000 genomes]
rs72894431	1.00[AMR][1000 genomes]
rs72896421	1.00[ASN][1000 genomes]
rs72896425	1.00[ASN][1000 genomes]
rs72896433	1.00[ASN][1000 genomes]
rs72896439	1.00[ASN][1000 genomes]
rs72896443	1.00[ASN][1000 genomes]
rs72896444	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78886200-78895800	Weak transcription	NHLF	lung
2	chr3:78887800-78896000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:78889400-78896000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:78889400-78898800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr3:78889400-78899000	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:78889600-78896200	Weak transcription	A549	lung
7	chr3:78889800-78895800	Weak transcription	Brain Substantia Nigra	brain
8	chr3:78890600-78895800	Weak transcription	Brain Anterior Caudate	brain
9	chr3:78890800-78896000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr3:78892600-78897600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:78893600-78900000	Enhancers	HepG2	liver
12	chr3:78894800-78895400	Enhancers	Fetal Intestine Small	intestine
13	chr3:78894800-78896000	Enhancers	Fetal Lung	lung
14	chr3:78895000-78895400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:78895000-78896000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:78895000-78896800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:78895000-78897400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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