Variant report

Variant	rs72895301
Chromosome Location	chr11:32723257-32723258
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11032007	0.93[AMR][1000 genomes]
rs11032049	0.93[AMR][1000 genomes]
rs12225523	0.93[AMR][1000 genomes]
rs7116407	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72897126	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72897185	0.93[AMR][1000 genomes]
rs72910946	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72910965	0.81[EUR][1000 genomes]
rs72910967	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832109	chr11:32661314-32830549	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897189	chr11:32677070-32751498	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1043616	chr11:32702734-32734607	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2758262	chr11:32714643-33049940	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
5	esv2759815	chr11:32714643-33049940	Flanking Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:32711000-32725600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:32722800-32724200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr11:32722800-32724600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:32723000-32723600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:32723000-32723600	Enhancers	Primary hematopoietic stem cells	blood
6	chr11:32723000-32723800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:32723200-32723800	Enhancers	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links