Variant report

Variant	rs72898050
Chromosome Location	chr6:81178549-81178550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2164610	0.81[EUR][1000 genomes]
rs584904	0.81[EUR][1000 genomes]
rs681085	0.81[EUR][1000 genomes]
rs6920239	1.00[ASN][1000 genomes]
rs72892041	1.00[ASN][1000 genomes]
rs72894198	1.00[ASN][1000 genomes]
rs72906139	1.00[ASN][1000 genomes]
rs72910216	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531333	chr6:81042427-81836484	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1019670	chr6:81086504-81569984	ZNF genes & repeats Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv915714	chr6:81134888-81366749	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1018028	chr6:81138011-81201697	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1019932	chr6:81155458-81217868	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv886311	chr6:81166178-81239971	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv886312	chr6:81166178-81309481	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv886313	chr6:81177227-81239971	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81163000-81179800	Weak transcription	Right Ventricle	heart
2	chr6:81167600-81181400	Weak transcription	Ovary	ovary
3	chr6:81167600-81184800	Weak transcription	Pancreas	Pancrea
4	chr6:81168200-81187000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:81170800-81187200	Weak transcription	HSMM	muscle
6	chr6:81175200-81179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:81175600-81180000	Weak transcription	Fetal Lung	lung
8	chr6:81175800-81179800	Weak transcription	Psoas Muscle	Psoas
9	chr6:81176800-81178600	Enhancers	HepG2	liver
10	chr6:81177400-81178600	Enhancers	Fetal Intestine Small	intestine
11	chr6:81177400-81179800	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:81177600-81178600	Enhancers	Fetal Intestine Large	intestine
13	chr6:81177800-81178600	Enhancers	Liver	Liver
14	chr6:81177800-81178600	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:81178000-81178600	Enhancers	Duodenum Mucosa	Duodenum
16	chr6:81178200-81178600	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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