Variant report

Variant	rs6920239
Chromosome Location	chr6:81007141-81007142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12525046	0.84[CEU][hapmap]
rs12526876	0.84[CEU][hapmap]
rs12527244	0.83[CEU][hapmap]
rs12527712	0.84[CEU][hapmap]
rs12527889	1.00[JPT][hapmap]
rs12528770	0.90[CEU][hapmap]
rs12529191	0.84[CEU][hapmap]
rs12529575	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12530290	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs67456645	0.82[AMR][1000 genomes]
rs72892041	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72894198	1.00[ASN][1000 genomes]
rs72898050	1.00[ASN][1000 genomes]
rs72906139	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72908830	0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72908854	0.82[AMR][1000 genomes]
rs72910216	1.00[ASN][1000 genomes]
rs764442	0.84[CEU][hapmap]
rs7755034	0.83[CEU][hapmap]
rs7757610	0.84[CEU][hapmap]
rs7771726	0.84[CEU][hapmap]
rs7772483	0.84[CEU][hapmap]
rs806841	1.00[JPT][hapmap]
rs9688535	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80998000-81009600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:81001200-81025800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:81004800-81008400	Weak transcription	Left Ventricle	heart
4	chr6:81005200-81008400	Weak transcription	Primary T cells from cord blood	blood
5	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:81005600-81010200	Weak transcription	HSMMtube	muscle
7	chr6:81005600-81013800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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