Variant report

Variant	rs67456645
Chromosome Location	chr6:80875673-80875674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:80873458..80875750-chr6:80890518..80893234,2	MCF-7	breast:
2	chr6:80873532..80876462-chr6:80884285..80886201,2	MCF-7	breast:

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1040593	0.83[ASN][1000 genomes]
rs1179571	1.00[ASN][1000 genomes]
rs12525046	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526876	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527244	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527712	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528770	0.93[EUR][1000 genomes]
rs12529191	0.93[EUR][1000 genomes]
rs12530290	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891532	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891545	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706829	1.00[ASN][1000 genomes]
rs4706830	1.00[ASN][1000 genomes]
rs55755254	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57913486	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57985210	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584372	1.00[ASN][1000 genomes]
rs585506	1.00[ASN][1000 genomes]
rs587999	1.00[ASN][1000 genomes]
rs588009	1.00[ASN][1000 genomes]
rs590686	1.00[ASN][1000 genomes]
rs59552964	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs598234	1.00[ASN][1000 genomes]
rs59973779	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610946	1.00[ASN][1000 genomes]
rs612208	1.00[ASN][1000 genomes]
rs613577	1.00[ASN][1000 genomes]
rs623085	1.00[ASN][1000 genomes]
rs631367	1.00[ASN][1000 genomes]
rs634499	1.00[ASN][1000 genomes]
rs636499	1.00[ASN][1000 genomes]
rs638921	1.00[ASN][1000 genomes]
rs640568	1.00[ASN][1000 genomes]
rs641229	1.00[ASN][1000 genomes]
rs642943	1.00[ASN][1000 genomes]
rs644666	1.00[ASN][1000 genomes]
rs6454149	1.00[ASN][1000 genomes]
rs646369	1.00[ASN][1000 genomes]
rs649148	1.00[ASN][1000 genomes]
rs651065	1.00[ASN][1000 genomes]
rs66518170	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66560352	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66606872	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs669420	1.00[ASN][1000 genomes]
rs670119	1.00[ASN][1000 genomes]
rs670390	1.00[ASN][1000 genomes]
rs67379633	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67597629	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632695	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677134	1.00[ASN][1000 genomes]
rs67851250	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67988458	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688442	1.00[ASN][1000 genomes]
rs6906403	1.00[ASN][1000 genomes]
rs6908084	1.00[ASN][1000 genomes]
rs6920239	0.82[AMR][1000 genomes]
rs6920430	0.83[ASN][1000 genomes]
rs6924011	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723308	1.00[ASN][1000 genomes]
rs72892417	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892426	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892441	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892456	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892458	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906861	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72906886	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72906894	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72908809	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908830	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72908854	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479994	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764442	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755034	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7757610	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771047	0.87[EUR][1000 genomes]
rs7771726	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772483	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806781	1.00[ASN][1000 genomes]
rs806839	1.00[ASN][1000 genomes]
rs806844	0.83[ASN][1000 genomes]
rs806846	0.83[ASN][1000 genomes]
rs806850	0.83[ASN][1000 genomes]
rs811567	1.00[ASN][1000 genomes]
rs932463	1.00[ASN][1000 genomes]
rs9443739	1.00[ASN][1000 genomes]
rs9688524	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688535	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv524214	chr6:80853873-80892427	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80836400-80891200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:80837000-80895200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:80839200-80889600	Weak transcription	Lung	lung
4	chr6:80841200-80895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:80842200-80914200	Weak transcription	Primary B cells from cord blood	blood
6	chr6:80853400-80877200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:80853800-80891800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:80855200-80880200	Weak transcription	Brain Angular Gyrus	brain
9	chr6:80855200-80907000	Weak transcription	Brain Hippocampus Middle	brain
10	chr6:80855200-80907200	Weak transcription	Ovary	ovary
11	chr6:80855400-80886200	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:80855400-80895400	Weak transcription	Fetal Stomach	stomach
13	chr6:80855800-80896000	Weak transcription	Aorta	Aorta
14	chr6:80856800-80878400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:80858200-80877400	Weak transcription	Liver	Liver
16	chr6:80858400-80880200	Weak transcription	Dnd41	blood
17	chr6:80863200-80907200	Weak transcription	Psoas Muscle	Psoas
18	chr6:80868600-80891200	Weak transcription	Pancreas	Pancrea
19	chr6:80868800-80880200	Weak transcription	Fetal Heart	heart
20	chr6:80870200-80880400	Weak transcription	Gastric	stomach
21	chr6:80870200-80884200	Weak transcription	Left Ventricle	heart
22	chr6:80870800-80886400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr6:80871400-80895800	Weak transcription	Right Ventricle	heart
24	chr6:80872000-80877200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:80872000-80883000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:80872800-80875800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:80873000-80875800	Enhancers	NHDF-Ad	bronchial
28	chr6:80873400-80875800	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr6:80873400-80875800	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:80873600-80875800	Enhancers	Primary monocytes fromperipheralblood	blood
31	chr6:80873600-80875800	Enhancers	Primary hematopoietic stem cells	blood
32	chr6:80873800-80875800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:80873800-80880000	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr6:80873800-80880200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr6:80873800-80883000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:80873800-80883000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr6:80874000-80875800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:80874000-80875800	Enhancers	HMEC	breast
39	chr6:80874000-80875800	Enhancers	HSMMtube	muscle
40	chr6:80874000-80875800	Enhancers	NHEK	skin
41	chr6:80874000-80876000	Enhancers	Muscle Satellite Cultured Cells	--
42	chr6:80874000-80876000	Enhancers	HSMM	muscle
43	chr6:80874000-80877200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:80874000-80877600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:80874000-80878000	Weak transcription	Small Intestine	intestine
46	chr6:80874000-80879200	Weak transcription	Fetal Thymus	thymus
47	chr6:80874000-80879400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:80874000-80881600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:80874000-80882600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr6:80874000-80884800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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