Variant report

Variant	rs12528770
Chromosome Location	chr6:80824432-80824433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:80816628..80819022-chr6:80824130..80826174,2	K562	blood:
2	chr6:80822914..80827144-chr6:80836132..80839755,3	K562	blood:
3	chr6:80819043..80821225-chr6:80823703..80826632,2	K562	blood:

Variant related genes	Relation type
ENSG00000083123	Chromatin interaction

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs12525046	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12526876	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12527244	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs12527712	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12529191	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530290	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs16891532	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs16891545	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs4706829	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs57913486	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57985210	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584372	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs585506	0.83[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs587999	1.00[JPT][hapmap]
rs588009	0.83[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs590686	1.00[JPT][hapmap]
rs595494	0.83[CEU][hapmap]
rs59552964	0.82[EUR][1000 genomes]
rs598234	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs59973779	0.82[EUR][1000 genomes]
rs604732	0.83[CEU][hapmap]
rs610946	1.00[JPT][hapmap]
rs612208	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs613577	1.00[JPT][hapmap]
rs627968	1.00[JPT][hapmap]
rs631367	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs634499	1.00[JPT][hapmap]
rs636499	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs640568	1.00[JPT][hapmap]
rs641229	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs644666	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs6454149	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs646369	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs651065	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs652576	0.83[CEU][hapmap];0.84[YRI][hapmap]
rs66518170	0.82[EUR][1000 genomes]
rs66560352	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs66606872	0.80[EUR][1000 genomes]
rs669420	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs670119	1.00[JPT][hapmap]
rs670390	0.81[CEU][hapmap];1.00[JPT][hapmap]
rs671614	1.00[JPT][hapmap]
rs67379633	0.82[EUR][1000 genomes]
rs67456645	0.93[EUR][1000 genomes]
rs67597629	0.82[EUR][1000 genomes]
rs67632695	0.82[EUR][1000 genomes]
rs67851250	0.82[EUR][1000 genomes]
rs67988458	0.82[EUR][1000 genomes]
rs685902	0.83[CEU][hapmap]
rs687702	0.83[CEU][hapmap]
rs688442	1.00[JPT][hapmap]
rs6908084	1.00[JPT][hapmap]
rs6920239	0.90[CEU][hapmap]
rs6924011	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs6927818	0.86[ASN][1000 genomes]
rs72892417	0.82[EUR][1000 genomes]
rs72892426	0.82[EUR][1000 genomes]
rs72892441	0.82[EUR][1000 genomes]
rs72892456	0.82[EUR][1000 genomes]
rs72892458	0.82[EUR][1000 genomes]
rs72906849	1.00[ASN][1000 genomes]
rs72906861	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906886	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906894	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908809	1.00[EUR][1000 genomes]
rs72908830	0.85[EUR][1000 genomes]
rs72908854	0.93[EUR][1000 genomes]
rs73479994	0.82[EUR][1000 genomes]
rs764442	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7755034	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7757610	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[EUR][1000 genomes]
rs7771047	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7771726	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs7772483	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[EUR][1000 genomes]
rs806781	1.00[JPT][hapmap]
rs9443739	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs9688535	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80816800-80836000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:80817000-80838200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:80817000-80852800	Weak transcription	Psoas Muscle	Psoas
4	chr6:80817600-80824600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:80817600-80825400	Weak transcription	Fetal Stomach	stomach
6	chr6:80817600-80828400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:80817600-80832200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:80817600-80836000	Weak transcription	HSMM	muscle
9	chr6:80817600-80838200	Weak transcription	Aorta	Aorta
10	chr6:80817600-80842000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr6:80817600-80842400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:80817800-80824600	Weak transcription	Primary T cells from cord blood	blood
13	chr6:80817800-80825400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:80817800-80826200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:80817800-80827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:80817800-80828600	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:80817800-80830600	Weak transcription	Brain Hippocampus Middle	brain
18	chr6:80817800-80840600	Weak transcription	Ovary	ovary
19	chr6:80818000-80838200	Weak transcription	Fetal Lung	lung
20	chr6:80818000-80861400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr6:80818000-80866000	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:80818400-80826200	Weak transcription	Liver	Liver
23	chr6:80821200-80826800	Weak transcription	Fetal Muscle Leg	muscle
24	chr6:80821400-80838000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:80822600-80840600	Weak transcription	Left Ventricle	heart
26	chr6:80823000-80826200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:80823200-80828600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:80824400-80825000	ZNF genes & repeats	Fetal Brain Female	brain
29	chr6:80824400-80843000	Weak transcription	Fetal Heart	heart

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