Variant report

Variant	rs72908854
Chromosome Location	chr6:80868370-80868371
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs1040593	0.83[ASN][1000 genomes]
rs1179571	1.00[ASN][1000 genomes]
rs12525046	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526876	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527244	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527712	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528770	0.93[EUR][1000 genomes]
rs12529191	0.93[EUR][1000 genomes]
rs12530290	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891532	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891545	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706829	1.00[ASN][1000 genomes]
rs4706830	1.00[ASN][1000 genomes]
rs55755254	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57913486	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57985210	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584372	1.00[ASN][1000 genomes]
rs585506	1.00[ASN][1000 genomes]
rs587999	1.00[ASN][1000 genomes]
rs588009	1.00[ASN][1000 genomes]
rs590686	1.00[ASN][1000 genomes]
rs59552964	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs598234	1.00[ASN][1000 genomes]
rs59973779	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610946	1.00[ASN][1000 genomes]
rs612208	1.00[ASN][1000 genomes]
rs613577	1.00[ASN][1000 genomes]
rs623085	1.00[ASN][1000 genomes]
rs631367	1.00[ASN][1000 genomes]
rs634499	1.00[ASN][1000 genomes]
rs636499	1.00[ASN][1000 genomes]
rs638921	1.00[ASN][1000 genomes]
rs640568	1.00[ASN][1000 genomes]
rs641229	1.00[ASN][1000 genomes]
rs642943	1.00[ASN][1000 genomes]
rs644666	1.00[ASN][1000 genomes]
rs6454149	1.00[ASN][1000 genomes]
rs646369	1.00[ASN][1000 genomes]
rs649148	1.00[ASN][1000 genomes]
rs651065	1.00[ASN][1000 genomes]
rs66518170	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66560352	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66606872	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs669420	1.00[ASN][1000 genomes]
rs670119	1.00[ASN][1000 genomes]
rs670390	1.00[ASN][1000 genomes]
rs67379633	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67456645	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67597629	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632695	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677134	1.00[ASN][1000 genomes]
rs67851250	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67988458	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688442	1.00[ASN][1000 genomes]
rs6906403	1.00[ASN][1000 genomes]
rs6908084	1.00[ASN][1000 genomes]
rs6920239	0.82[AMR][1000 genomes]
rs6920430	0.83[ASN][1000 genomes]
rs6924011	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723308	1.00[ASN][1000 genomes]
rs72892417	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892426	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892441	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892456	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892458	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906861	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72906886	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72906894	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72908809	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908830	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73479994	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs764442	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755034	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7757610	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771047	0.87[EUR][1000 genomes]
rs7771726	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772483	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806781	1.00[ASN][1000 genomes]
rs806839	1.00[ASN][1000 genomes]
rs806844	0.83[ASN][1000 genomes]
rs806846	0.83[ASN][1000 genomes]
rs806850	0.83[ASN][1000 genomes]
rs811567	1.00[ASN][1000 genomes]
rs932463	1.00[ASN][1000 genomes]
rs9443739	1.00[ASN][1000 genomes]
rs9688524	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688535	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv524214	chr6:80853873-80892427	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80836400-80891200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:80837000-80895200	Weak transcription	Fetal Intestine Small	intestine
3	chr6:80838600-80873200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:80839200-80873200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:80839200-80889600	Weak transcription	Lung	lung
6	chr6:80841200-80895800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:80841400-80873400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr6:80842200-80914200	Weak transcription	Primary B cells from cord blood	blood
9	chr6:80844200-80873200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr6:80853400-80877200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:80853600-80873400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:80853800-80891800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:80855200-80880200	Weak transcription	Brain Angular Gyrus	brain
14	chr6:80855200-80907000	Weak transcription	Brain Hippocampus Middle	brain
15	chr6:80855200-80907200	Weak transcription	Ovary	ovary
16	chr6:80855400-80886200	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:80855400-80895400	Weak transcription	Fetal Stomach	stomach
18	chr6:80855600-80872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:80855800-80896000	Weak transcription	Aorta	Aorta
20	chr6:80856000-80873000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:80856600-80873200	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:80856800-80878400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr6:80858000-80870600	Weak transcription	HSMM	muscle
24	chr6:80858200-80873200	Weak transcription	Primary T cells from cord blood	blood
25	chr6:80858200-80877400	Weak transcription	Liver	Liver
26	chr6:80858400-80880200	Weak transcription	Dnd41	blood
27	chr6:80861800-80870600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:80861800-80873000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr6:80863200-80907200	Weak transcription	Psoas Muscle	Psoas
30	chr6:80864000-80868600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr6:80865000-80868400	Weak transcription	Fetal Heart	heart
32	chr6:80865400-80873200	Weak transcription	Colon Smooth Muscle	Colon
33	chr6:80866200-80873800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr6:80867800-80868800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr6:80868200-80868600	Enhancers	Left Ventricle	heart
36	chr6:80868200-80868600	Enhancers	Pancreas	Pancrea
37	chr6:80868200-80872800	Weak transcription	HMEC	breast

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