Variant report

Variant	rs16891532
Chromosome Location	chr6:80922992-80922993
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs1040593	0.83[ASN][1000 genomes]
rs1179571	1.00[ASN][1000 genomes]
rs12525046	0.92[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12526876	0.92[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527244	0.92[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12527712	0.92[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12528770	0.91[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs12529191	0.92[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs12530290	0.91[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1324119	0.81[CEU][hapmap]
rs16891545	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4706829	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4706830	1.00[ASN][1000 genomes]
rs55755254	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57913486	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57985210	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs584372	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs585506	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs587999	0.86[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs588009	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs590686	0.86[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[ASN][1000 genomes]
rs59552964	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs598234	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs59973779	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610946	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs612208	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs613577	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs623085	1.00[ASN][1000 genomes]
rs627968	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs631367	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs634499	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs636499	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs638921	1.00[ASN][1000 genomes]
rs640568	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs641229	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs642943	1.00[ASN][1000 genomes]
rs644666	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6454149	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs646369	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs649148	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs651065	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs66518170	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66560352	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66606872	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs669420	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs670119	0.86[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs670390	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs671614	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs67379633	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67456645	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67597629	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67632695	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677134	1.00[ASN][1000 genomes]
rs67851250	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67988458	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs688442	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6906403	1.00[ASN][1000 genomes]
rs6908084	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6920430	0.83[ASN][1000 genomes]
rs6924011	0.90[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723308	1.00[ASN][1000 genomes]
rs72892417	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892426	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892441	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892456	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892458	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906886	0.80[EUR][1000 genomes]
rs72906894	0.80[EUR][1000 genomes]
rs72908809	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908854	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73479994	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs742834	0.81[CEU][hapmap]
rs764442	0.92[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755034	0.92[CEU][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs7757610	0.92[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771047	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7771726	0.92[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772483	0.92[CEU][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs806781	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs806839	0.82[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs806841	1.00[JPT][hapmap]
rs806844	0.83[ASN][1000 genomes]
rs806846	0.83[ASN][1000 genomes]
rs806850	0.83[ASN][1000 genomes]
rs811567	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs932463	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9443739	0.83[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9688524	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9688535	0.92[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830708	chr6:80844283-80996876	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv886309	chr6:80880138-80959885	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886310	chr6:80880138-81025879	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1033452	chr6:80888667-81000213	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:80882400-80935400	Weak transcription	Dnd41	blood
2	chr6:80891600-80931200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:80896400-80927400	Weak transcription	Aorta	Aorta
4	chr6:80896400-80943800	Weak transcription	Right Ventricle	heart
5	chr6:80905600-80923800	Weak transcription	Small Intestine	intestine
6	chr6:80908000-80936200	Weak transcription	Fetal Lung	lung
7	chr6:80909000-80940200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:80910000-80933400	Weak transcription	Esophagus	oesophagus
9	chr6:80911200-80924200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:80911800-80935200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:80913400-80923200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:80914600-80980400	Weak transcription	Ovary	ovary
13	chr6:80914800-80929000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr6:80914800-80934400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:80914800-80938400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr6:80914800-80938600	Weak transcription	Liver	Liver
17	chr6:80915400-80938200	Weak transcription	Primary T cells from cord blood	blood
18	chr6:80915400-80942000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:80915800-80956000	Weak transcription	Brain Substantia Nigra	brain
20	chr6:80916800-80930000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:80919400-80923000	Enhancers	Fetal Heart	heart
22	chr6:80920400-80923000	Enhancers	Stomach Mucosa	stomach
23	chr6:80920800-80929200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:80920800-80943600	Weak transcription	Psoas Muscle	Psoas
25	chr6:80920800-80953800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:80921000-80923400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr6:80921200-80923600	Weak transcription	Fetal Stomach	stomach
28	chr6:80921200-80923600	Weak transcription	Gastric	stomach
29	chr6:80921200-80923800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:80921200-80924800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:80921200-80929000	Weak transcription	Left Ventricle	heart
32	chr6:80921200-80940200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:80921200-80940200	Weak transcription	HSMMtube	muscle
34	chr6:80921400-80923600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr6:80921400-80923600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr6:80921400-80923600	Weak transcription	HSMM	muscle
37	chr6:80921400-80924400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:80921400-80927200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:80921400-80927200	Weak transcription	NHDF-Ad	bronchial
40	chr6:80921400-80929200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:80921400-80973200	Weak transcription	Primary B cells from cord blood	blood
42	chr6:80921600-80924800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:80921600-80938400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:80921800-80923600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:80921800-80923600	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:80922200-80964200	Weak transcription	Fetal Intestine Small	intestine
47	chr6:80922400-80929200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr6:80922600-80923600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:80922600-80930000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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