Variant report

Variant	rs806841
Chromosome Location	chr6:81028433-81028434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs12525046	1.00[JPT][hapmap]
rs12526876	1.00[JPT][hapmap]
rs12527244	1.00[JPT][hapmap]
rs12527712	1.00[JPT][hapmap]
rs12529575	1.00[JPT][hapmap]
rs12530290	1.00[JPT][hapmap]
rs16891532	1.00[JPT][hapmap]
rs16891545	1.00[JPT][hapmap]
rs4706829	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs584372	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs585506	1.00[JPT][hapmap]
rs587999	1.00[JPT][hapmap]
rs588009	1.00[JPT][hapmap]
rs590686	1.00[JPT][hapmap]
rs598234	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs610946	1.00[JPT][hapmap]
rs612208	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs613577	1.00[JPT][hapmap]
rs627968	1.00[JPT][hapmap]
rs631367	1.00[JPT][hapmap]
rs634499	1.00[JPT][hapmap]
rs636499	1.00[JPT][hapmap]
rs640568	1.00[JPT][hapmap]
rs641229	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs644666	1.00[JPT][hapmap]
rs6454149	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs646369	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs651065	1.00[JPT][hapmap]
rs669420	1.00[JPT][hapmap]
rs670119	1.00[JPT][hapmap]
rs670390	1.00[JPT][hapmap]
rs671614	1.00[JPT][hapmap]
rs688442	1.00[JPT][hapmap]
rs6908084	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6920239	1.00[JPT][hapmap]
rs6924011	1.00[JPT][hapmap]
rs764442	1.00[JPT][hapmap]
rs7757610	1.00[JPT][hapmap]
rs7771047	1.00[JPT][hapmap]
rs7771726	1.00[JPT][hapmap]
rs7772483	1.00[JPT][hapmap]
rs806781	1.00[JPT][hapmap]
rs806839	1.00[JPT][hapmap]
rs806850	1.00[YRI][hapmap]
rs811567	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs932463	1.00[JPT][hapmap]
rs9443739	1.00[JPT][hapmap]
rs9688535	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034096	chr6:80856135-81150170	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv932996	chr6:80880896-81134991	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv497995	chr6:80883701-81134991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:81005200-81056200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:81013800-81028800	Weak transcription	HSMM	muscle
3	chr6:81015600-81036400	Weak transcription	Ovary	ovary
4	chr6:81015600-81037400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:81026800-81028600	Weak transcription	NHDF-Ad	bronchial
6	chr6:81026800-81037400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:81027000-81028800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:81027000-81044600	Weak transcription	Aorta	Aorta
9	chr6:81027800-81028800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:81027800-81028800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:81028400-81029600	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links